Analysis of interatomic Contacts of Structural Units in PDB entry:
9UYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UYJ entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 9UYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6ASN 368
B
 VAL 2VAL 112
R
 VAL 36CYS 1358
R
 ALA 1361ALA 1361
R
 LEU 1365LYS 1367
L
 SER 147SER 157
C
 ASP 2VAL 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9UYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 109Right-handed alpha
Helix 2
AA2
R
37 64Right-handed alpha
Helix 3
AA3
R
70 89Right-handed alpha
Helix 4
AA4
R
89 99Right-handed alpha
Helix 5
AA5
R
108 140Right-handed alpha
Helix 6
AA6
R
150 175Right-handed alpha
Helix 7
AA7
R
201 216Right-handed alpha
Helix 8
AA8
R
217 237Right-handed alpha
Helix 9
AA9
R
247 274Right-handed alpha
Helix 10
AB1
R
285 298Right-handed alpha
Helix 11
AB2
R
299 304Right-handed alpha
Helix 12
AB3
C
80 84Right-handed 310
Helix 13
AB4
C
211 215Right-handed 310
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There are 13 sheets in PDB entry 9UYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
40 42anti-parallel
Strand 3
A
19 22anti-parallel
Strand 4
A
8 12anti-parallel
Strand 5
R
1361 1363anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
170 171parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 85first strand
Strand 2
A
52 60anti-parallel
Strand 3
A
140 151anti-parallel
Strand 4
A
166 168anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 85first strand
Strand 2
A
52 60anti-parallel
Strand 3
A
140 151anti-parallel
Strand 4
A
127 129anti-parallel
Strand 5
A
288 290anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
198 202anti-parallel
Strand 3
A
220 222anti-parallel
Strand 4
A
266 268anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
346 352parallel
Strand 3
A
319 327anti-parallel
Strand 4
A
231 239anti-parallel
Strand 5
A
252 258anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
271 274anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 23first strand
Strand 2
B
77 82anti-parallel
Strand 3
B
67 72anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
34 39anti-parallel
Strand 3
B
91 97anti-parallel
Strand 4
B
108 110anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 7first strand
Strand 2
C
20 26anti-parallel
Strand 3
C
73 76anti-parallel
Strand 4
C
63 66anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
103 105parallel
Strand 3
C
86 91anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
45 49anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 131first strand
Strand 2
C
141 148anti-parallel
Strand 3
C
202 208anti-parallel
Strand 4
C
192 197anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 184first strand
Strand 2
C
169 176anti-parallel
Strand 3
C
156 163anti-parallel
Strand 4
C
217 224anti-parallel
Strand 5
C
231 233anti-parallel
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