Analysis of interatomic Contacts of Structural Units in PDB entry:
9UYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UYL entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 9UYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 LEU 42TYR 304
R
 CYS 1358CYS 1358
R
 ALA 1361ALA 1361
R
 LEU 1365ALA 1366
L
 SER 127PHE 136
A
 THR 6ASN 368
B
 VAL 2SER 113
C
 ASP 2VAL 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9UYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
R
42 65Right-handed alpha
Helix 2
AA2
R
70 88Right-handed alpha
Helix 3
AA3
R
89 98Right-handed alpha
Helix 4
AA4
R
105 108Right-handed 310
Helix 5
AA5
R
109 141Right-handed alpha
Helix 6
AA6
R
150 174Right-handed alpha
Helix 7
AA7
R
202 215Right-handed alpha
Helix 8
AA8
R
215 227Right-handed alpha
Helix 9
AA9
R
253 276Right-handed alpha
Helix 10
AB1
R
285 304Right-handed alpha
Helix 11
AB2
A
98 109Right-handed alpha
Helix 12
AB3
A
159 163Right-handed 310
Helix 13
AB4
B
86 90Right-handed 310
Helix 14
AB5
C
80 84Right-handed 310
Helix 15
AB6
C
211 215Right-handed 310
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There are 12 sheets in PDB entry 9UYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
1360 1362first strand
Strand 2
A
9 11anti-parallel
Strand 3
A
19 22anti-parallel
Strand 4
A
37 42anti-parallel
Strand 5
A
112 117anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
166 171parallel
Strand 3
A
143 150anti-parallel
Strand 4
A
53 60anti-parallel
Strand 5
A
81 85anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
288 289anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
199 203anti-parallel
Strand 3
A
214 217anti-parallel
Strand 4
A
271 274anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
343 351parallel
Strand 3
A
317 328anti-parallel
Strand 4
A
230 241anti-parallel
Strand 5
A
249 258anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
108 112parallel
Strand 3
B
91 97anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
45 47anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
77 82anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
25 26anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
103 105parallel
Strand 3
C
86 91anti-parallel
Strand 4
C
34 38anti-parallel
Strand 5
C
46 49anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 23first strand
Strand 2
C
73 76anti-parallel
Strand 3
C
64 66anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 131first strand
Strand 2
C
141 148anti-parallel
Strand 3
C
202 208anti-parallel
Strand 4
C
192 197anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 184first strand
Strand 2
C
169 176anti-parallel
Strand 3
C
156 163anti-parallel
Strand 4
C
217 224anti-parallel
Strand 5
C
231 233anti-parallel
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