Analysis of interatomic Contacts of Structural Units in PDB entry:
9UYM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UYM entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 9UYM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	GLU 24	SER 157
B	VAL 2	THR 111
C	ILE 3	VAL 242
A	THR 7	ASN 361
R	ASP 20	SER 318
R	CYS 1358	CYS 1358
R	ALA 1361	ALA 1361
R	LEU 1365	LYS 1367

There are 17 helices in PDB entry 9UYM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	24	40	Right-handed alpha
Helix 2	AA2	L	134	141	Right-handed alpha
Helix 3	AA3	C	80	84	Right-handed 310
Helix 4	AA4	C	211	215	Right-handed 310
Helix 5	AA5	A	15	17	Right-handed 310
Helix 6	AA6	A	101	110	Right-handed alpha
Helix 7	AA7	R	36	65	Right-handed alpha
Helix 8	AA8	R	70	89	Right-handed alpha
Helix 9	AA9	R	89	98	Right-handed alpha
Helix 10	AB1	R	109	141	Right-handed alpha
Helix 11	AB2	R	150	167	Right-handed alpha
Helix 12	AB3	R	168	173	Right-handed 310
Helix 13	AB4	R	197	215	Right-handed alpha
Helix 14	AB5	R	216	235	Right-handed alpha
Helix 15	AB6	R	242	275	Right-handed alpha
Helix 16	AB7	R	281	305	Right-handed alpha
Helix 17	AB8	R	312	318	Right-handed alpha

There are 15 sheets in PDB entry 9UYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	68	70	first strand
Strand 2	L	98	102	anti-parallel
Strand 3	L	113	114	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	21	23	anti-parallel
Strand 3	B	78	79	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	93	97	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	C	21	25	anti-parallel
Strand 3	C	71	75	anti-parallel
Strand 4	C	64	67	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	46	50	anti-parallel
Strand 3	C	34	39	anti-parallel
Strand 4	C	86	91	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	144	149	anti-parallel
Strand 3	C	202	207	anti-parallel
Strand 4	C	192	196	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	135	first strand
Strand 2	C	240	241	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	184	first strand
Strand 2	C	169	176	anti-parallel
Strand 3	C	156	163	anti-parallel
Strand 4	C	217	224	anti-parallel
Strand 5	C	233	234	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	118	first strand
Strand 2	A	38	44	anti-parallel
Strand 3	A	19	23	anti-parallel
Strand 4	A	9	13	anti-parallel
Strand 5	R	1361	1363	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	165	172	parallel
Strand 3	A	141	152	anti-parallel
Strand 4	A	53	63	anti-parallel
Strand 5	A	77	85	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	165	172	parallel
Strand 3	A	141	152	anti-parallel
Strand 4	A	128	130	anti-parallel
Strand 5	A	289	291	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	187	first strand
Strand 2	A	200	204	anti-parallel
Strand 3	A	215	221	anti-parallel
Strand 4	A	269	275	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	336	344	parallel
Strand 3	A	317	328	anti-parallel
Strand 4	A	232	243	anti-parallel
Strand 5	A	247	248	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	336	344	parallel
Strand 3	A	317	328	anti-parallel
Strand 4	A	232	243	anti-parallel
Strand 5	A	252	259	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	177	180	first strand
Strand 2	R	185	188	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UYM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UYM