Analysis of interatomic Contacts of Structural Units in PDB entry:
9UYP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UYP entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 9UYP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 30	HIS 846
B	ALA 30	LEU 844

There are 50 helices in PDB entry 9UYP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	81	Right-handed alpha
Helix 2	AA2	A	103	115	Right-handed alpha
Helix 3	AA3	A	153	165	Right-handed alpha
Helix 4	AA4	A	178	183	Right-handed 310
Helix 5	AA5	A	199	211	Right-handed alpha
Helix 6	AA6	A	225	241	Right-handed alpha
Helix 7	AA7	A	258	268	Right-handed alpha
Helix 8	AA8	A	283	295	Right-handed alpha
Helix 9	AA9	A	319	324	Right-handed 310
Helix 10	AB1	A	336	344	Right-handed alpha
Helix 11	AB2	A	356	365	Right-handed alpha
Helix 12	AB3	A	400	423	Right-handed alpha
Helix 13	AB4	A	437	446	Right-handed alpha
Helix 14	AB5	A	586	609	Right-handed alpha
Helix 15	AB6	A	613	620	Right-handed alpha
Helix 16	AB7	A	620	642	Right-handed alpha
Helix 17	AB8	A	651	676	Right-handed alpha
Helix 18	AB9	A	696	719	Right-handed alpha
Helix 19	AC1	A	734	738	Right-handed 310
Helix 20	AC2	A	746	752	Right-handed alpha
Helix 21	AC3	A	755	772	Right-handed alpha
Helix 22	AC4	A	781	806	Right-handed alpha
Helix 23	AC5	A	811	835	Right-handed alpha
Helix 24	AC6	A	836	843	Right-handed alpha
Helix 25	AC7	B	65	80	Right-handed alpha
Helix 26	AC8	B	101	114	Right-handed alpha
Helix 27	AC9	B	153	165	Right-handed alpha
Helix 28	AD1	B	178	183	Right-handed 310
Helix 29	AD2	B	196	211	Right-handed alpha
Helix 30	AD3	B	225	241	Right-handed alpha
Helix 31	AD4	B	259	268	Right-handed alpha
Helix 32	AD5	B	283	295	Right-handed alpha
Helix 33	AD6	B	313	317	Right-handed 310
Helix 34	AD7	B	336	345	Right-handed alpha
Helix 35	AD8	B	356	365	Right-handed alpha
Helix 36	AD9	B	398	400	Right-handed 310
Helix 37	AE1	B	401	423	Right-handed alpha
Helix 38	AE2	B	430	434	Right-handed 310
Helix 39	AE3	B	437	446	Right-handed alpha
Helix 40	AE4	B	500	504	Right-handed 310
Helix 41	AE5	B	586	610	Right-handed alpha
Helix 42	AE6	B	622	643	Right-handed alpha
Helix 43	AE7	B	648	678	Right-handed alpha
Helix 44	AE8	B	695	719	Right-handed alpha
Helix 45	AE9	B	746	772	Right-handed alpha
Helix 46	AF1	B	773	775	Right-handed 310
Helix 47	AF2	B	782	806	Right-handed alpha
Helix 48	AF3	B	807	809	Right-handed 310
Helix 49	AF4	B	811	834	Right-handed alpha
Helix 50	AF5	B	836	844	Right-handed alpha

There are 19 sheets in PDB entry 9UYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	91	93	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	96	97	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	251	first strand
Strand 2	A	215	221	parallel
Strand 3	A	275	279	parallel
Strand 4	A	302	304	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	331	first strand
Strand 2	A	470	477	anti-parallel
Strand 3	A	485	487	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	451	first strand
Strand 2	A	457	458	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	530	first strand
Strand 2	A	538	542	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	549	first strand
Strand 2	A	555	556	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	564	first strand
Strand 2	A	571	573	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	724	726	first strand
Strand 2	A	741	743	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	40	41	parallel
Strand 3	B	145	147	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	96	97	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	190	192	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	221	first strand
Strand 2	B	245	251	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	302	305	parallel
Strand 3	B	327	331	parallel
Strand 4	B	470	476	anti-parallel
Strand 5	B	486	493	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	451	first strand
Strand 2	B	457	459	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	530	first strand
Strand 2	B	538	542	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	547	548	first strand
Strand 2	B	556	557	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	562	564	first strand
Strand 2	B	571	573	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	726	first strand
Strand 2	B	741	744	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UYP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UYP