Analysis of interatomic Contacts of Structural Units in PDB entry:
9UZA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UZA entry

There are 6 chains in PDB entry 9UZA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 585	SER 898
H	GLU 1	PRO 216
L	ASP 1	ARG 216
B	GLU 585	SER 898
C	GLU 1	PRO 216
D	ASP 1	ARG 216

There are 43 helices in PDB entry 9UZA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	586	594	Right-handed alpha
Helix 2	AA2	A	594	604	Right-handed alpha
Helix 3	AA3	A	606	623	Right-handed alpha
Helix 4	AA4	A	625	648	Right-handed alpha
Helix 5	AA5	A	655	659	Right-handed 310
Helix 6	AA6	A	661	670	Right-handed alpha
Helix 7	AA7	A	670	681	Right-handed alpha
Helix 8	AA8	A	682	683	Right-handed 310
Helix 9	AA9	A	684	690	Right-handed 310
Helix 10	AB1	A	748	759	Right-handed alpha
Helix 11	AB2	A	811	818	Right-handed alpha
Helix 12	AB3	A	831	853	Right-handed alpha
Helix 13	AB4	A	869	873	Right-handed 310
Helix 14	AB5	A	876	897	Right-handed alpha
Helix 15	AB6	H	28	32	Right-handed 310
Helix 16	AB7	H	62	65	Right-handed 310
Helix 17	AB8	H	87	91	Right-handed 310
Helix 18	AB9	H	159	161	Right-handed 310
Helix 19	AC1	H	204	207	Right-handed 310
Helix 20	AC2	L	84	88	Right-handed 310
Helix 21	AC3	L	126	132	Right-handed alpha
Helix 22	AC4	L	188	193	Right-handed alpha
Helix 23	AC5	B	586	594	Right-handed alpha
Helix 24	AC6	B	594	604	Right-handed alpha
Helix 25	AC7	B	606	622	Right-handed alpha
Helix 26	AC8	B	625	649	Right-handed alpha
Helix 27	AC9	B	655	659	Right-handed 310
Helix 28	AD1	B	661	670	Right-handed alpha
Helix 29	AD2	B	670	681	Right-handed alpha
Helix 30	AD3	B	684	690	Right-handed 310
Helix 31	AD4	B	748	759	Right-handed alpha
Helix 32	AD5	B	813	818	Right-handed alpha
Helix 33	AD6	B	831	853	Right-handed alpha
Helix 34	AD7	B	869	873	Right-handed 310
Helix 35	AD8	B	876	897	Right-handed alpha
Helix 36	AD9	C	28	32	Right-handed 310
Helix 37	AE1	C	62	65	Right-handed 310
Helix 38	AE2	C	87	91	Right-handed 310
Helix 39	AE3	C	190	192	Right-handed 310
Helix 40	AE4	C	204	207	Right-handed 310
Helix 41	AE5	D	84	88	Right-handed 310
Helix 42	AE6	D	126	132	Right-handed alpha
Helix 43	AE7	D	188	193	Right-handed alpha

There are 24 sheets in PDB entry 9UZA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	744	746	first strand
Strand 2	A	694	698	parallel
Strand 3	A	821	827	anti-parallel
Strand 4	A	857	863	parallel
Strand 5	A	801	805	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	110	114	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	40	anti-parallel
Strand 5	H	44	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	110	114	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	103	106	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	127	first strand
Strand 2	H	138	148	anti-parallel
Strand 3	H	183	188	anti-parallel
Strand 4	H	166	168	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	127	first strand
Strand 2	H	138	148	anti-parallel
Strand 3	H	179	181	anti-parallel
Strand 4	H	172	173	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	157	first strand
Strand 2	H	197	203	anti-parallel
Strand 3	H	208	214	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	75	80	anti-parallel
Strand 4	L	67	72	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	107	112	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	38	43	anti-parallel
Strand 5	L	50	54	anti-parallel
Strand 6	L	58	59	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	107	112	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	102	103	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	134	144	anti-parallel
Strand 3	L	178	187	anti-parallel
Strand 4	L	164	168	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	159	first strand
Strand 2	L	153	155	anti-parallel
Strand 3	L	196	201	anti-parallel
Strand 4	L	210	215	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	744	746	first strand
Strand 2	B	694	698	parallel
Strand 3	B	820	825	anti-parallel
Strand 4	B	856	862	parallel
Strand 5	B	801	805	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	8	first strand
Strand 2	C	17	25	anti-parallel
Strand 3	C	78	84	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	110	114	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	33	40	anti-parallel
Strand 5	C	44	52	anti-parallel
Strand 6	C	57	60	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	110	114	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	103	106	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	127	first strand
Strand 2	C	138	148	anti-parallel
Strand 3	C	179	188	anti-parallel
Strand 4	C	166	168	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	127	first strand
Strand 2	C	138	148	anti-parallel
Strand 3	C	179	188	anti-parallel
Strand 4	C	172	173	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	157	first strand
Strand 2	C	197	203	anti-parallel
Strand 3	C	208	214	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	75	80	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	107	112	parallel
Strand 3	D	89	95	anti-parallel
Strand 4	D	38	43	anti-parallel
Strand 5	D	49	54	anti-parallel
Strand 6	D	58	59	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	107	112	parallel
Strand 3	D	89	95	anti-parallel
Strand 4	D	102	103	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	134	144	anti-parallel
Strand 3	D	178	187	anti-parallel
Strand 4	D	164	168	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	159	first strand
Strand 2	D	149	155	anti-parallel
Strand 3	D	196	203	anti-parallel
Strand 4	D	210	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UZA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UZA