Analysis of interatomic Contacts of Structural Units in PDB entry:
9UZP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UZP entry

There are 16 chains in PDB entry 9UZP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 8	SER 363
B	VAL 5	ILE 340
C	ASN 2	LEU 146
D	LYS 28	GLU 189
E	MET 1	LYS 111
F	VAL 25	ARG 128
G	ALA 2	SER 195
I	MET 1	PHE 132
J	MET 1	THR 117
K	MET 1	ARG 35
c	ASN 2	LEU 146
d	LYS 28	GLU 189
e	ALA 2	LYS 111
f	VAL 25	ARG 128
j	MET 1	THR 117
k	MET 1	ARG 35

There are100 helices in PDB entry 9UZP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	34	Right-handed 310
Helix 2	AA2	A	66	72	Right-handed 310
Helix 3	AA3	A	77	80	Right-handed 310
Helix 4	AA4	A	108	119	Right-handed alpha
Helix 5	AA5	A	139	148	Right-handed alpha
Helix 6	AA6	A	168	179	Right-handed alpha
Helix 7	AA7	A	182	190	Right-handed alpha
Helix 8	AA8	A	193	205	Right-handed alpha
Helix 9	AA9	A	210	221	Right-handed alpha
Helix 10	AB1	A	225	239	Right-handed alpha
Helix 11	AB2	A	242	246	Right-handed 310
Helix 12	AB3	A	260	267	Right-handed 310
Helix 13	AB4	A	276	280	Right-handed 310
Helix 14	AB5	A	281	287	Right-handed alpha
Helix 15	AB6	A	340	363	Right-handed alpha
Helix 16	AB7	B	21	25	Right-handed 310
Helix 17	AB8	B	26	29	Right-handed 310
Helix 18	AB9	B	30	35	Right-handed alpha
Helix 19	AC1	B	49	60	Right-handed alpha
Helix 20	AC2	B	84	89	Right-handed alpha
Helix 21	AC3	B	120	125	Right-handed alpha
Helix 22	AC4	B	126	135	Right-handed alpha
Helix 23	AC5	B	141	154	Right-handed alpha
Helix 24	AC6	B	159	180	Right-handed alpha
Helix 25	AC7	B	183	197	Right-handed alpha
Helix 26	AC8	B	198	211	Right-handed alpha
Helix 27	AC9	B	213	221	Right-handed alpha
Helix 28	AD1	B	227	237	Right-handed alpha
Helix 29	AD2	B	240	245	Right-handed alpha
Helix 30	AD3	B	252	256	Right-handed 310
Helix 31	AD4	B	257	266	Right-handed alpha
Helix 32	AD5	B	293	299	Right-handed 310
Helix 33	AD6	B	305	316	Right-handed alpha
Helix 34	AD7	B	321	338	Right-handed alpha
Helix 35	AD8	C	3	40	Right-handed alpha
Helix 36	AD9	C	41	44	Right-handed 310
Helix 37	AE1	C	61	65	Right-handed 310
Helix 38	AE2	C	108	118	Right-handed alpha
Helix 39	AE3	C	135	146	Right-handed alpha
Helix 40	AE4	D	29	51	Right-handed alpha
Helix 41	AE5	D	53	91	Right-handed alpha
Helix 42	AE6	D	95	99	Right-handed 310
Helix 43	AE7	D	141	154	Right-handed alpha
Helix 44	AE8	D	163	171	Right-handed alpha
Helix 45	AE9	D	183	188	Right-handed alpha
Helix 46	AF1	E	2	23	Right-handed alpha
Helix 47	AF2	E	26	49	Right-handed alpha
Helix 48	AF3	E	96	109	Right-handed alpha
Helix 49	AF4	F	26	47	Right-handed alpha
Helix 50	AF5	F	48	56	Right-handed alpha
Helix 51	AF6	F	65	69	Right-handed 310
Helix 52	AF7	F	106	115	Right-handed alpha
Helix 53	AF8	F	121	127	Right-handed alpha
Helix 54	AF9	G	9	25	Right-handed alpha
Helix 55	AG1	G	58	74	Right-handed alpha
Helix 56	AG2	G	78	90	Right-handed alpha
Helix 57	AG3	G	101	108	Right-handed alpha
Helix 58	AG4	G	109	111	Right-handed 310
Helix 59	AG5	G	144	160	Right-handed alpha
Helix 60	AG6	G	176	195	Right-handed alpha
Helix 61	AG7	I	2	13	Right-handed alpha
Helix 62	AG8	I	25	35	Right-handed alpha
Helix 63	AG9	I	38	42	Right-handed 310
Helix 64	AH1	I	43	48	Right-handed alpha
Helix 65	AH2	I	54	62	Right-handed alpha
Helix 66	AH3	I	116	127	Right-handed alpha
Helix 67	AH4	I	128	132	Right-handed 310
Helix 68	AH5	J	2	38	Right-handed alpha
Helix 69	AH6	J	74	76	Right-handed 310
Helix 70	AH7	J	77	83	Right-handed alpha
Helix 71	AH8	J	101	114	Right-handed alpha
Helix 72	AH9	K	2	27	Right-handed alpha
Helix 73	AI1	K	28	34	Right-handed alpha
Helix 74	AI2	c	3	29	Right-handed alpha
Helix 75	AI3	c	29	40	Right-handed alpha
Helix 76	AI4	c	41	45	Right-handed 310
Helix 77	AI5	c	61	66	Right-handed alpha
Helix 78	AI6	c	108	118	Right-handed alpha
Helix 79	AI7	c	136	146	Right-handed alpha
Helix 80	AI8	d	29	51	Right-handed alpha
Helix 81	AI9	d	53	91	Right-handed alpha
Helix 82	AJ1	d	95	99	Right-handed 310
Helix 83	AJ2	d	141	154	Right-handed alpha
Helix 84	AJ3	d	163	171	Right-handed alpha
Helix 85	AJ4	d	180	189	Right-handed alpha
Helix 86	AJ5	e	3	23	Right-handed alpha
Helix 87	AJ6	e	26	47	Right-handed alpha
Helix 88	AJ7	e	96	109	Right-handed alpha
Helix 89	AJ8	f	26	47	Right-handed alpha
Helix 90	AJ9	f	47	56	Right-handed alpha
Helix 91	AK1	f	63	69	Right-handed alpha
Helix 92	AK2	f	106	113	Right-handed alpha
Helix 93	AK3	f	121	128	Right-handed alpha
Helix 94	AK4	j	2	17	Right-handed alpha
Helix 95	AK5	j	17	38	Right-handed alpha
Helix 96	AK6	j	74	76	Right-handed 310
Helix 97	AK7	j	77	84	Right-handed alpha
Helix 98	AK8	j	101	117	Right-handed alpha
Helix 99	AK9	k	2	27	Right-handed alpha
Helix 100	AL1	k	27	34	Right-handed alpha

There are 23 sheets in PDB entry 9UZP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	21	26	anti-parallel
Strand 3	A	35	40	anti-parallel
Strand 4	A	100	101	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	130	132	anti-parallel
Strand 3	A	82	84	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	122	127	anti-parallel
Strand 3	A	89	93	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	B	268	269	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	281	first strand
Strand 2	A	298	306	parallel
Strand 3	I	69	79	parallel
Strand 4	G	33	42	parallel
Strand 5	G	116	119	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	281	first strand
Strand 2	A	298	306	parallel
Strand 3	I	69	79	parallel
Strand 4	G	33	42	parallel
Strand 5	G	122	123	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	291	first strand
Strand 2	A	309	314	parallel
Strand 3	I	82	85	parallel
Strand 4	G	47	51	parallel
Strand 5	G	133	138	parallel
Strand 6	G	5	6	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	46	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	63	69	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	96	100	anti-parallel
Strand 3	B	113	116	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	77	first strand
Strand 2	C	83	86	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	C	91	95	anti-parallel
Strand 3	C	125	126	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	104	first strand
Strand 2	D	108	114	anti-parallel
Strand 3	D	134	135	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	104	first strand
Strand 2	D	108	114	anti-parallel
Strand 3	D	121	124	anti-parallel
Strand 4	D	159	161	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	59	first strand
Strand 2	E	65	75	anti-parallel
Strand 3	E	80	85	anti-parallel
Strand 4	E	88	93	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	73	first strand
Strand 2	F	81	83	anti-parallel
Strand 3	F	92	93	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	44	46	first strand
Strand 2	J	49	56	anti-parallel
Strand 3	J	59	66	anti-parallel
Strand 4	J	88	91	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	76	77	first strand
Strand 2	c	83	84	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	101	103	first strand
Strand 2	c	91	95	anti-parallel
Strand 3	c	125	126	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	101	104	first strand
Strand 2	d	108	114	anti-parallel
Strand 3	d	134	135	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	101	104	first strand
Strand 2	d	108	114	anti-parallel
Strand 3	d	121	124	anti-parallel
Strand 4	d	159	161	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	54	58	first strand
Strand 2	e	66	75	anti-parallel
Strand 3	e	80	85	anti-parallel
Strand 4	e	88	93	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	72	76	first strand
Strand 2	f	79	83	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	44	46	first strand
Strand 2	j	49	56	anti-parallel
Strand 3	j	59	66	anti-parallel
Strand 4	j	88	91	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UZP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UZP