Analysis of interatomic Contacts of Structural Units in PDB entry:
9V09

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V09 entry

There are 8 chains in PDB entry 9V09 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	HIS 1140
A	LYS 42	ALA 759
C	GLY 69	THR 425
D	ALA 2	MET 147
I	GLU 143	SER 197
N	MET 1	GLY 76
R	LYS 19	GLN 104
U	MET 1	GLY 76

There are 63 helices in PDB entry 9V09. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	252	256	Right-handed 310
Helix 2	AA2	B	987	991	Right-handed 310
Helix 3	AA3	B	1044	1062	Right-handed alpha
Helix 4	AA4	B	1069	1074	Right-handed alpha
Helix 5	AA5	B	1091	1096	Right-handed alpha
Helix 6	AA6	B	1097	1100	Right-handed 310
Helix 7	AA7	B	1101	1109	Right-handed alpha
Helix 8	AA8	B	1125	1138	Right-handed alpha
Helix 9	AA9	A	57	75	Right-handed alpha
Helix 10	AB1	A	82	95	Right-handed alpha
Helix 11	AB2	A	98	117	Right-handed alpha
Helix 12	AB3	A	118	123	Right-handed 310
Helix 13	AB4	A	127	153	Right-handed alpha
Helix 14	AB5	A	153	160	Right-handed alpha
Helix 15	AB6	A	169	182	Right-handed alpha
Helix 16	AB7	A	185	205	Right-handed alpha
Helix 17	AB8	A	210	224	Right-handed alpha
Helix 18	AB9	A	226	245	Right-handed alpha
Helix 19	AC1	A	245	252	Right-handed alpha
Helix 20	AC2	A	255	277	Right-handed alpha
Helix 21	AC3	A	279	281	Right-handed 310
Helix 22	AC4	A	282	295	Right-handed alpha
Helix 23	AC5	A	298	313	Right-handed alpha
Helix 24	AC6	A	315	329	Right-handed alpha
Helix 25	AC7	A	331	354	Right-handed alpha
Helix 26	AC8	A	355	359	Right-handed 310
Helix 27	AC9	A	360	379	Right-handed alpha
Helix 28	AD1	A	383	398	Right-handed alpha
Helix 29	AD2	A	399	401	Right-handed 310
Helix 30	AD3	A	404	417	Right-handed alpha
Helix 31	AD4	A	425	441	Right-handed alpha
Helix 32	AD5	A	445	464	Right-handed alpha
Helix 33	AD6	A	468	484	Right-handed alpha
Helix 34	AD7	A	488	515	Right-handed alpha
Helix 35	AD8	A	544	562	Right-handed alpha
Helix 36	AD9	A	593	603	Right-handed alpha
Helix 37	AE1	A	609	617	Right-handed alpha
Helix 38	AE2	A	620	634	Right-handed alpha
Helix 39	AE3	A	694	708	Right-handed alpha
Helix 40	AE4	A	711	721	Right-handed alpha
Helix 41	AE5	A	728	742	Right-handed alpha
Helix 42	AE6	C	103	115	Right-handed alpha
Helix 43	AE7	C	200	204	Right-handed 310
Helix 44	AE8	C	220	232	Right-handed alpha
Helix 45	AE9	C	233	238	Right-handed 310
Helix 46	AF1	C	241	247	Right-handed alpha
Helix 47	AF2	C	250	265	Right-handed alpha
Helix 48	AF3	C	276	286	Right-handed alpha
Helix 49	AF4	C	291	301	Right-handed alpha
Helix 50	AF5	C	303	316	Right-handed alpha
Helix 51	AF6	C	333	337	Right-handed 310
Helix 52	AF7	D	3	16	Right-handed alpha
Helix 53	AF8	D	86	91	Right-handed alpha
Helix 54	AF9	D	98	111	Right-handed alpha
Helix 55	AG1	D	120	130	Right-handed alpha
Helix 56	AG2	D	131	146	Right-handed alpha
Helix 57	AG3	I	157	167	Right-handed alpha
Helix 58	AG4	I	186	197	Right-handed alpha
Helix 59	AG5	N	22	35	Right-handed alpha
Helix 60	AG6	N	37	39	Right-handed 310
Helix 61	AG7	N	55	60	Right-handed 310
Helix 62	AG8	R	80	91	Right-handed alpha
Helix 63	AG9	U	22	34	Right-handed alpha

There are 38 sheets in PDB entry 9V09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1007	1009	first strand
Strand 2	B	1025	1030	anti-parallel
Strand 3	B	1037	1042	anti-parallel
Strand 4	B	4	10	anti-parallel
Strand 5	B	1088	1090	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	21	first strand
Strand 2	B	30	34	anti-parallel
Strand 3	B	38	44	anti-parallel
Strand 4	B	49	56	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	67	first strand
Strand 2	B	76	80	anti-parallel
Strand 3	B	85	94	anti-parallel
Strand 4	B	97	107	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	130	134	anti-parallel
Strand 3	B	141	144	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	169	first strand
Strand 2	B	177	182	anti-parallel
Strand 3	B	189	196	anti-parallel
Strand 4	B	201	204	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	169	first strand
Strand 2	B	177	182	anti-parallel
Strand 3	B	189	196	anti-parallel
Strand 4	B	210	211	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	237	240	anti-parallel
Strand 4	B	245	248	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	263	first strand
Strand 2	B	271	275	anti-parallel
Strand 3	B	280	284	anti-parallel
Strand 4	B	301	304	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	316	first strand
Strand 2	B	321	325	anti-parallel
Strand 3	B	331	336	anti-parallel
Strand 4	B	347	353	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	365	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	711	712	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	365	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	715	716	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	403	first strand
Strand 2	B	698	704	anti-parallel
Strand 3	B	690	694	anti-parallel
Strand 4	B	681	682	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	413	first strand
Strand 2	B	424	428	anti-parallel
Strand 3	B	433	439	anti-parallel
Strand 4	B	442	445	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	463	first strand
Strand 2	B	467	472	anti-parallel
Strand 3	B	476	480	anti-parallel
Strand 4	B	485	490	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	503	first strand
Strand 2	B	507	512	anti-parallel
Strand 3	B	515	522	anti-parallel
Strand 4	B	525	533	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	542	first strand
Strand 2	B	555	560	anti-parallel
Strand 3	B	565	570	anti-parallel
Strand 4	B	578	581	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	595	first strand
Strand 2	B	600	606	anti-parallel
Strand 3	B	610	615	anti-parallel
Strand 4	B	624	630	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	642	first strand
Strand 2	B	647	652	anti-parallel
Strand 3	B	657	661	anti-parallel
Strand 4	B	666	670	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	741	anti-parallel
Strand 3	B	786	795	anti-parallel
Strand 4	B	801	806	anti-parallel
Strand 5	B	764	765	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	819	first strand
Strand 2	B	828	835	anti-parallel
Strand 3	B	846	854	anti-parallel
Strand 4	B	857	866	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	874	875	first strand
Strand 2	B	880	881	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	913	917	first strand
Strand 2	B	920	924	anti-parallel
Strand 3	B	930	936	anti-parallel
Strand 4	B	941	948	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	957	961	first strand
Strand 2	B	964	968	anti-parallel
Strand 3	B	974	978	anti-parallel
Strand 4	B	993	998	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1076	1077	first strand
Strand 2	B	1082	1083	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	529	first strand
Strand 2	R	30	34	parallel
Strand 3	A	566	570	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	589	592	first strand
Strand 2	A	575	578	anti-parallel
Strand 3	R	26	27	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	640	642	first strand
Strand 2	A	653	655	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	747	first strand
Strand 2	A	755	757	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	82	first strand
Strand 2	C	179	184	anti-parallel
Strand 3	C	157	167	anti-parallel
Strand 4	C	97	99	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	82	first strand
Strand 2	C	179	184	anti-parallel
Strand 3	C	157	167	anti-parallel
Strand 4	C	135	141	anti-parallel
Strand 5	C	119	123	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	423	424	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	356	357	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	362	first strand
Strand 2	C	414	418	anti-parallel
Strand 3	C	400	404	anti-parallel
Strand 4	C	384	391	anti-parallel
Strand 5	C	368	370	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	25	first strand
Strand 2	D	32	38	anti-parallel
Strand 3	D	49	55	anti-parallel
Strand 4	D	66	69	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	146	147	first strand
Strand 2	I	154	155	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	12	16	first strand
Strand 2	N	2	6	anti-parallel
Strand 3	N	66	71	parallel
Strand 4	N	41	45	anti-parallel
Strand 5	N	48	49	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	71	72	first strand
Strand 2	R	78	79	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	12	16	first strand
Strand 2	U	2	6	anti-parallel
Strand 3	U	65	71	parallel
Strand 4	U	41	44	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V09

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V09