Analysis of interatomic Contacts of Structural Units in PDB entry:
9V0A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V0A entry

There are 8 chains in PDB entry 9V0A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	PHE 49	THR 425
D	ALA 2	MET 147
I	GLU 143	SER 197
N	MET 1	GLY 76
U	MET 1	GLY 76
B	MET 1	HIS 1140
A	LYS 42	ALA 759
R	LYS 19	GLN 104

There are 62 helices in PDB entry 9V0A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	53	57	Right-handed 310
Helix 2	AA2	C	103	112	Right-handed alpha
Helix 3	AA3	C	192	197	Right-handed 310
Helix 4	AA4	C	220	232	Right-handed alpha
Helix 5	AA5	C	233	238	Right-handed 310
Helix 6	AA6	C	241	247	Right-handed alpha
Helix 7	AA7	C	249	265	Right-handed alpha
Helix 8	AA8	C	276	286	Right-handed alpha
Helix 9	AA9	C	291	301	Right-handed alpha
Helix 10	AB1	C	303	317	Right-handed alpha
Helix 11	AB2	D	3	16	Right-handed alpha
Helix 12	AB3	D	86	91	Right-handed alpha
Helix 13	AB4	D	98	112	Right-handed alpha
Helix 14	AB5	D	120	130	Right-handed alpha
Helix 15	AB6	D	130	145	Right-handed alpha
Helix 16	AB7	I	157	168	Right-handed alpha
Helix 17	AB8	I	185	195	Right-handed alpha
Helix 18	AB9	N	22	34	Right-handed alpha
Helix 19	AC1	U	22	34	Right-handed alpha
Helix 20	AC2	U	56	60	Right-handed 310
Helix 21	AC3	B	252	256	Right-handed 310
Helix 22	AC4	B	366	370	Right-handed 310
Helix 23	AC5	B	986	991	Right-handed 310
Helix 24	AC6	B	1044	1062	Right-handed alpha
Helix 25	AC7	B	1069	1074	Right-handed alpha
Helix 26	AC8	B	1091	1095	Right-handed alpha
Helix 27	AC9	B	1096	1100	Right-handed 310
Helix 28	AD1	B	1101	1108	Right-handed alpha
Helix 29	AD2	B	1125	1138	Right-handed alpha
Helix 30	AD3	A	57	75	Right-handed alpha
Helix 31	AD4	A	82	95	Right-handed alpha
Helix 32	AD5	A	98	115	Right-handed alpha
Helix 33	AD6	A	116	123	Right-handed 310
Helix 34	AD7	A	127	153	Right-handed alpha
Helix 35	AD8	A	153	164	Right-handed alpha
Helix 36	AD9	A	169	182	Right-handed alpha
Helix 37	AE1	A	185	205	Right-handed alpha
Helix 38	AE2	A	211	224	Right-handed alpha
Helix 39	AE3	A	226	231	Right-handed alpha
Helix 40	AE4	A	231	252	Right-handed alpha
Helix 41	AE5	A	255	277	Right-handed alpha
Helix 42	AE6	A	279	282	Right-handed 310
Helix 43	AE7	A	283	295	Right-handed alpha
Helix 44	AE8	A	298	314	Right-handed alpha
Helix 45	AE9	A	315	327	Right-handed alpha
Helix 46	AF1	A	331	354	Right-handed alpha
Helix 47	AF2	A	357	359	Right-handed 310
Helix 48	AF3	A	360	379	Right-handed alpha
Helix 49	AF4	A	383	399	Right-handed alpha
Helix 50	AF5	A	403	417	Right-handed alpha
Helix 51	AF6	A	425	441	Right-handed alpha
Helix 52	AF7	A	445	464	Right-handed alpha
Helix 53	AF8	A	468	515	Right-handed alpha
Helix 54	AF9	A	544	562	Right-handed alpha
Helix 55	AG1	A	593	603	Right-handed alpha
Helix 56	AG2	A	609	618	Right-handed alpha
Helix 57	AG3	A	620	634	Right-handed alpha
Helix 58	AG4	A	693	708	Right-handed alpha
Helix 59	AG5	A	711	721	Right-handed alpha
Helix 60	AG6	A	729	742	Right-handed alpha
Helix 61	AG7	R	53	58	Right-handed alpha
Helix 62	AG8	R	81	91	Right-handed alpha

There are 36 sheets in PDB entry 9V0A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	99	first strand
Strand 2	C	157	172	anti-parallel
Strand 3	C	178	184	anti-parallel
Strand 4	C	79	83	anti-parallel
Strand 5	C	119	123	parallel
Strand 6	C	135	141	anti-parallel
Strand 7	C	157	172	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	423	424	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	356	357	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	362	first strand
Strand 2	C	415	417	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	370	first strand
Strand 2	C	384	391	anti-parallel
Strand 3	C	397	404	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	25	first strand
Strand 2	D	33	37	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	55	first strand
Strand 2	D	66	69	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	12	16	first strand
Strand 2	N	2	6	anti-parallel
Strand 3	N	65	71	parallel
Strand 4	N	41	45	anti-parallel
Strand 5	N	48	49	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	12	16	first strand
Strand 2	U	2	6	anti-parallel
Strand 3	U	65	71	parallel
Strand 4	U	41	44	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1007	1009	first strand
Strand 2	B	1028	1030	anti-parallel
Strand 3	B	1037	1042	anti-parallel
Strand 4	B	4	10	anti-parallel
Strand 5	B	1088	1090	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	30	34	anti-parallel
Strand 3	B	38	44	anti-parallel
Strand 4	B	49	56	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	65	first strand
Strand 2	B	77	80	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	97	105	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	130	134	anti-parallel
Strand 3	B	139	144	anti-parallel
Strand 4	B	155	158	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	169	first strand
Strand 2	B	177	184	anti-parallel
Strand 3	B	187	196	anti-parallel
Strand 4	B	201	204	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	169	first strand
Strand 2	B	177	184	anti-parallel
Strand 3	B	187	196	anti-parallel
Strand 4	B	210	212	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	237	240	anti-parallel
Strand 4	B	245	248	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	263	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	279	287	anti-parallel
Strand 4	B	297	307	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	316	first strand
Strand 2	B	321	325	anti-parallel
Strand 3	B	332	336	anti-parallel
Strand 4	B	347	352	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	365	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	711	712	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	365	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	715	716	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	403	first strand
Strand 2	B	698	704	anti-parallel
Strand 3	B	690	694	anti-parallel
Strand 4	B	678	682	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	413	first strand
Strand 2	B	424	428	anti-parallel
Strand 3	B	433	439	anti-parallel
Strand 4	B	442	445	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	463	first strand
Strand 2	B	467	472	anti-parallel
Strand 3	B	476	480	anti-parallel
Strand 4	B	486	490	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	503	first strand
Strand 2	B	507	512	anti-parallel
Strand 3	B	515	522	anti-parallel
Strand 4	B	525	533	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	542	first strand
Strand 2	B	557	560	anti-parallel
Strand 3	B	566	569	anti-parallel
Strand 4	B	576	578	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	596	first strand
Strand 2	B	599	606	anti-parallel
Strand 3	B	610	615	anti-parallel
Strand 4	B	624	630	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	643	first strand
Strand 2	B	646	652	anti-parallel
Strand 3	B	657	661	anti-parallel
Strand 4	B	666	670	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	741	anti-parallel
Strand 3	B	786	795	anti-parallel
Strand 4	B	801	806	anti-parallel
Strand 5	B	763	765	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	819	first strand
Strand 2	B	828	835	anti-parallel
Strand 3	B	845	854	anti-parallel
Strand 4	B	857	867	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	890	893	first strand
Strand 2	B	899	903	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	915	917	first strand
Strand 2	B	920	922	anti-parallel
Strand 3	B	931	936	anti-parallel
Strand 4	B	941	947	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	954	961	first strand
Strand 2	B	964	969	anti-parallel
Strand 3	B	973	978	anti-parallel
Strand 4	B	993	999	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1076	1078	first strand
Strand 2	B	1081	1083	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	528	first strand
Strand 2	R	30	35	parallel
Strand 3	A	565	570	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	575	578	first strand
Strand 2	A	589	592	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	642	first strand
Strand 2	A	653	656	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V0A

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V0A