Analysis of interatomic Contacts of Structural Units in PDB entry:
9V0B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V0B entry

There are 8 chains in PDB entry 9V0B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 42	ALA 759
B	MET 1	HIS 1140
C	THR 51	THR 425
D	ALA 2	MET 147
I	GLU 143	SER 197
N	MET 1	GLY 76
R	LYS 19	GLN 104
U	MET 1	GLY 76

There are 63 helices in PDB entry 9V0B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	75	Right-handed alpha
Helix 2	AA2	A	82	96	Right-handed alpha
Helix 3	AA3	A	98	117	Right-handed alpha
Helix 4	AA4	A	118	123	Right-handed 310
Helix 5	AA5	A	127	153	Right-handed alpha
Helix 6	AA6	A	153	160	Right-handed alpha
Helix 7	AA7	A	169	182	Right-handed alpha
Helix 8	AA8	A	185	206	Right-handed alpha
Helix 9	AA9	A	211	224	Right-handed alpha
Helix 10	AB1	A	225	252	Right-handed alpha
Helix 11	AB2	A	255	277	Right-handed alpha
Helix 12	AB3	A	279	281	Right-handed 310
Helix 13	AB4	A	282	295	Right-handed alpha
Helix 14	AB5	A	298	313	Right-handed alpha
Helix 15	AB6	A	315	329	Right-handed alpha
Helix 16	AB7	A	331	354	Right-handed alpha
Helix 17	AB8	A	355	359	Right-handed 310
Helix 18	AB9	A	360	379	Right-handed alpha
Helix 19	AC1	A	383	399	Right-handed alpha
Helix 20	AC2	A	403	418	Right-handed alpha
Helix 21	AC3	A	425	441	Right-handed alpha
Helix 22	AC4	A	445	464	Right-handed alpha
Helix 23	AC5	A	468	483	Right-handed alpha
Helix 24	AC6	A	488	515	Right-handed alpha
Helix 25	AC7	A	544	562	Right-handed alpha
Helix 26	AC8	A	593	603	Right-handed alpha
Helix 27	AC9	A	609	617	Right-handed alpha
Helix 28	AD1	A	620	634	Right-handed alpha
Helix 29	AD2	A	693	708	Right-handed alpha
Helix 30	AD3	A	711	721	Right-handed alpha
Helix 31	AD4	A	728	742	Right-handed alpha
Helix 32	AD5	B	251	256	Right-handed 310
Helix 33	AD6	B	987	990	Right-handed 310
Helix 34	AD7	B	1044	1062	Right-handed alpha
Helix 35	AD8	B	1069	1074	Right-handed alpha
Helix 36	AD9	B	1091	1096	Right-handed alpha
Helix 37	AE1	B	1097	1100	Right-handed 310
Helix 38	AE2	B	1101	1109	Right-handed alpha
Helix 39	AE3	B	1125	1138	Right-handed alpha
Helix 40	AE4	C	53	57	Right-handed 310
Helix 41	AE5	C	103	116	Right-handed alpha
Helix 42	AE6	C	200	204	Right-handed 310
Helix 43	AE7	C	220	232	Right-handed alpha
Helix 44	AE8	C	233	238	Right-handed 310
Helix 45	AE9	C	241	248	Right-handed alpha
Helix 46	AF1	C	250	265	Right-handed alpha
Helix 47	AF2	C	276	286	Right-handed alpha
Helix 48	AF3	C	291	301	Right-handed alpha
Helix 49	AF4	C	303	316	Right-handed alpha
Helix 50	AF5	C	333	337	Right-handed 310
Helix 51	AF6	D	3	16	Right-handed alpha
Helix 52	AF7	D	86	91	Right-handed alpha
Helix 53	AF8	D	98	111	Right-handed alpha
Helix 54	AF9	D	120	130	Right-handed alpha
Helix 55	AG1	D	131	145	Right-handed alpha
Helix 56	AG2	I	157	167	Right-handed alpha
Helix 57	AG3	I	185	197	Right-handed alpha
Helix 58	AG4	N	22	34	Right-handed alpha
Helix 59	AG5	N	37	39	Right-handed 310
Helix 60	AG6	N	55	60	Right-handed 310
Helix 61	AG7	R	80	91	Right-handed alpha
Helix 62	AG8	U	22	35	Right-handed alpha
Helix 63	AG9	U	56	60	Right-handed 310

There are 38 sheets in PDB entry 9V0B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	529	first strand
Strand 2	R	26	33	parallel
Strand 3	A	568	577	anti-parallel
Strand 4	A	590	592	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	642	first strand
Strand 2	A	653	656	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	746	747	first strand
Strand 2	A	755	756	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1004	1009	first strand
Strand 2	B	1025	1032	anti-parallel
Strand 3	B	1037	1042	anti-parallel
Strand 4	B	4	10	anti-parallel
Strand 5	B	1088	1090	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	21	first strand
Strand 2	B	30	35	anti-parallel
Strand 3	B	38	44	anti-parallel
Strand 4	B	49	56	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	67	first strand
Strand 2	B	76	80	anti-parallel
Strand 3	B	85	94	anti-parallel
Strand 4	B	97	107	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	130	134	anti-parallel
Strand 3	B	141	144	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	167	first strand
Strand 2	B	177	184	anti-parallel
Strand 3	B	187	195	anti-parallel
Strand 4	B	202	204	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	167	first strand
Strand 2	B	177	184	anti-parallel
Strand 3	B	187	195	anti-parallel
Strand 4	B	210	211	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	237	240	anti-parallel
Strand 4	B	245	248	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	263	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	279	287	anti-parallel
Strand 4	B	297	307	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	318	first strand
Strand 2	B	321	325	anti-parallel
Strand 3	B	332	336	anti-parallel
Strand 4	B	347	352	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	365	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	711	712	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	365	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	715	716	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	403	first strand
Strand 2	B	698	704	anti-parallel
Strand 3	B	690	694	anti-parallel
Strand 4	B	678	682	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	413	first strand
Strand 2	B	424	428	anti-parallel
Strand 3	B	433	439	anti-parallel
Strand 4	B	442	446	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	463	first strand
Strand 2	B	467	472	anti-parallel
Strand 3	B	476	480	anti-parallel
Strand 4	B	485	490	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	503	first strand
Strand 2	B	507	512	anti-parallel
Strand 3	B	515	522	anti-parallel
Strand 4	B	525	533	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	542	first strand
Strand 2	B	555	559	anti-parallel
Strand 3	B	565	570	anti-parallel
Strand 4	B	575	581	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	595	first strand
Strand 2	B	600	606	anti-parallel
Strand 3	B	610	615	anti-parallel
Strand 4	B	627	630	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	643	first strand
Strand 2	B	646	652	anti-parallel
Strand 3	B	657	661	anti-parallel
Strand 4	B	666	670	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	741	anti-parallel
Strand 3	B	786	795	anti-parallel
Strand 4	B	801	806	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	819	first strand
Strand 2	B	828	835	anti-parallel
Strand 3	B	846	854	anti-parallel
Strand 4	B	857	866	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	874	875	first strand
Strand 2	B	880	881	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	890	893	first strand
Strand 2	B	899	903	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	913	917	first strand
Strand 2	B	920	924	anti-parallel
Strand 3	B	930	936	anti-parallel
Strand 4	B	941	948	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	957	961	first strand
Strand 2	B	964	968	anti-parallel
Strand 3	B	974	979	anti-parallel
Strand 4	B	992	998	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1076	1078	first strand
Strand 2	B	1081	1083	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	81	first strand
Strand 2	C	178	184	anti-parallel
Strand 3	C	156	167	anti-parallel
Strand 4	C	135	141	anti-parallel
Strand 5	C	119	123	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	100	first strand
Strand 2	C	156	167	anti-parallel
Strand 3	C	178	184	anti-parallel
Strand 4	C	171	172	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	423	424	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	356	357	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	362	first strand
Strand 2	C	414	418	anti-parallel
Strand 3	C	400	404	anti-parallel
Strand 4	C	384	391	anti-parallel
Strand 5	C	368	370	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	25	first strand
Strand 2	D	32	38	anti-parallel
Strand 3	D	49	55	anti-parallel
Strand 4	D	66	69	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	146	147	first strand
Strand 2	I	154	155	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	12	16	first strand
Strand 2	N	2	6	anti-parallel
Strand 3	N	66	71	parallel
Strand 4	N	41	45	anti-parallel
Strand 5	N	48	49	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	71	72	first strand
Strand 2	R	78	79	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	12	16	first strand
Strand 2	U	2	6	anti-parallel
Strand 3	U	65	71	parallel
Strand 4	U	41	44	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V0B

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V0B