Analysis of interatomic Contacts of Structural Units in PDB entry:
9V0J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V0J entry

There are 4 chains in PDB entry 9V0J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 5	LYS 380
B	ASP 3	PRO 569
C	ARG 2	HIS 1599
D	GLY 14	LEU 351

There are 77 helices in PDB entry 9V0J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	45	Right-handed alpha
Helix 2	AA2	A	47	51	Right-handed 310
Helix 3	AA3	A	94	97	Right-handed 310
Helix 4	AA4	A	98	117	Right-handed alpha
Helix 5	AA5	A	121	126	Right-handed alpha
Helix 6	AA6	A	127	141	Right-handed alpha
Helix 7	AA7	A	185	189	Right-handed 310
Helix 8	AA8	A	192	197	Right-handed alpha
Helix 9	AA9	A	198	200	Right-handed 310
Helix 10	AB1	A	205	214	Right-handed alpha
Helix 11	AB2	A	216	231	Right-handed alpha
Helix 12	AB3	A	248	256	Right-handed 310
Helix 13	AB4	A	257	269	Right-handed alpha
Helix 14	AB5	A	283	288	Right-handed alpha
Helix 15	AB6	A	296	301	Right-handed alpha
Helix 16	AB7	A	309	320	Right-handed alpha
Helix 17	AB8	A	350	359	Right-handed alpha
Helix 18	AB9	A	361	367	Right-handed alpha
Helix 19	AC1	B	65	74	Right-handed alpha
Helix 20	AC2	B	76	80	Right-handed 310
Helix 21	AC3	B	135	161	Right-handed alpha
Helix 22	AC4	B	167	177	Right-handed alpha
Helix 23	AC5	B	194	198	Right-handed 310
Helix 24	AC6	B	200	213	Right-handed alpha
Helix 25	AC7	B	222	224	Right-handed 310
Helix 26	AC8	B	231	236	Right-handed alpha
Helix 27	AC9	B	244	252	Right-handed alpha
Helix 28	AD1	B	266	271	Right-handed alpha
Helix 29	AD2	B	279	288	Right-handed alpha
Helix 30	AD3	B	295	303	Right-handed alpha
Helix 31	AD4	B	305	319	Right-handed alpha
Helix 32	AD5	B	348	356	Right-handed alpha
Helix 33	AD6	B	360	365	Right-handed alpha
Helix 34	AD7	B	366	369	Right-handed 310
Helix 35	AD8	B	386	391	Right-handed alpha
Helix 36	AD9	B	391	396	Right-handed alpha
Helix 37	AE1	B	506	516	Right-handed alpha
Helix 38	AE2	B	526	533	Right-handed alpha
Helix 39	AE3	B	536	547	Right-handed alpha
Helix 40	AE4	C	70	78	Right-handed alpha
Helix 41	AE5	C	110	122	Right-handed alpha
Helix 42	AE6	C	178	183	Right-handed 310
Helix 43	AE7	C	190	197	Right-handed alpha
Helix 44	AE8	C	198	211	Right-handed alpha
Helix 45	AE9	C	238	242	Right-handed 310
Helix 46	AF1	C	270	280	Right-handed alpha
Helix 47	AF2	C	280	285	Right-handed alpha
Helix 48	AF3	C	300	304	Right-handed 310
Helix 49	AF4	C	305	318	Right-handed alpha
Helix 50	AF5	C	346	360	Right-handed alpha
Helix 51	AF6	C	458	465	Right-handed alpha
Helix 52	AF7	C	743	749	Right-handed alpha
Helix 53	AF8	C	796	809	Right-handed alpha
Helix 54	AF9	C	912	916	Right-handed 310
Helix 55	AG1	C	917	927	Right-handed alpha
Helix 56	AG2	C	952	962	Right-handed alpha
Helix 57	AG3	C	979	994	Right-handed alpha
Helix 58	AG4	C	1178	1186	Right-handed alpha
Helix 59	AG5	C	1208	1218	Right-handed alpha
Helix 60	AG6	C	1223	1237	Right-handed alpha
Helix 61	AG7	C	1286	1291	Right-handed alpha
Helix 62	AG8	C	1394	1412	Right-handed alpha
Helix 63	AG9	C	1468	1479	Right-handed alpha
Helix 64	AH1	C	1567	1581	Right-handed alpha
Helix 65	AH2	C	1582	1584	Right-handed 310
Helix 66	AH3	C	1585	1599	Right-handed alpha
Helix 67	AH4	D	27	38	Right-handed alpha
Helix 68	AH5	D	50	54	Right-handed 310
Helix 69	AH6	D	103	107	Right-handed 310
Helix 70	AH7	D	119	131	Right-handed alpha
Helix 71	AH8	D	175	177	Right-handed 310
Helix 72	AH9	D	178	203	Right-handed alpha
Helix 73	AI1	D	236	247	Right-handed alpha
Helix 74	AI2	D	271	285	Right-handed alpha
Helix 75	AI3	D	309	319	Right-handed alpha
Helix 76	AI4	D	320	322	Right-handed 310
Helix 77	AI5	D	339	345	Right-handed alpha

There are 23 sheets in PDB entry 9V0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	27	first strand
Strand 2	A	9	16	anti-parallel
Strand 3	A	80	90	anti-parallel
Strand 4	A	69	72	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	27	first strand
Strand 2	A	9	16	anti-parallel
Strand 3	A	80	90	anti-parallel
Strand 4	A	62	66	anti-parallel
Strand 5	A	55	59	anti-parallel
Strand 6	B	84	88	anti-parallel
Strand 7	B	91	95	anti-parallel
Strand 8	B	123	131	anti-parallel
Strand 9	B	9	15	anti-parallel
Strand 10	B	21	26	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	154	158	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	177	first strand
Strand 2	A	233	236	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	221	first strand
Strand 2	B	225	230	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	262	first strand
Strand 2	B	323	325	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	373	first strand
Strand 2	B	333	336	anti-parallel
Strand 3	B	403	412	anti-parallel
Strand 4	B	521	525	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	373	first strand
Strand 2	B	333	336	anti-parallel
Strand 3	B	403	412	anti-parallel
Strand 4	B	551	557	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	68	69	parallel
Strand 3	C	23	24	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	134	first strand
Strand 2	C	137	146	anti-parallel
Strand 3	C	149	151	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	134	first strand
Strand 2	C	137	146	anti-parallel
Strand 3	C	99	104	anti-parallel
Strand 4	C	161	166	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	127	first strand
Strand 2	C	153	156	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	244	first strand
Strand 2	C	250	262	anti-parallel
Strand 3	C	215	226	anti-parallel
Strand 4	C	170	176	parallel
Strand 5	C	331	337	parallel
Strand 6	C	364	368	parallel
Strand 7	C	403	407	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	298	first strand
Strand 2	C	215	226	anti-parallel
Strand 3	C	250	262	anti-parallel
Strand 4	C	886	893	parallel
Strand 5	C	902	908	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	343	first strand
Strand 2	C	379	381	parallel
Strand 3	C	397	398	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	756	757	first strand
Strand 2	C	812	814	parallel
Strand 3	C	852	856	anti-parallel
Strand 4	C	859	865	anti-parallel
Strand 5	C	870	875	anti-parallel
Strand 6	C	773	777	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1351	1357	first strand
Strand 2	C	1369	1375	anti-parallel
Strand 3	C	1384	1390	anti-parallel
Strand 4	C	942	950	anti-parallel
Strand 5	C	1414	1418	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1205	1206	first strand
Strand 2	C	1257	1260	anti-parallel
Strand 3	C	1240	1242	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1254	1255	first strand
Strand 2	C	1296	1298	anti-parallel
Strand 3	C	1377	1378	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1439	1442	first strand
Strand 2	C	1545	1550	anti-parallel
Strand 3	C	1509	1512	anti-parallel
Strand 4	C	1501	1504	anti-parallel
Strand 5	C	1482	1484	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	64	first strand
Strand 2	D	15	19	anti-parallel
Strand 3	D	86	89	parallel
Strand 4	D	348	349	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	43	first strand
Strand 2	D	79	80	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	167	first strand
Strand 2	D	148	156	anti-parallel
Strand 3	D	93	101	parallel
Strand 4	D	257	262	parallel
Strand 5	D	287	292	parallel
Strand 6	D	324	325	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V0J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V0J