Analysis of interatomic Contacts of Structural Units in PDB entry:
9V0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9V0M entry

There is 1 chain in PDB entry 9V0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -3GLN 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 9V0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 3Right-handed alpha
Helix 2
AA2
A
28 33Right-handed alpha
Helix 3
AA3
A
34 37Right-handed 310
Helix 4
AA4
A
87 104Right-handed alpha
Helix 5
AA5
A
127 139Right-handed alpha
Helix 6
AA6
A
150 157Right-handed 310
Helix 7
AA7
A
191 203Right-handed alpha
Helix 8
AA8
A
212 224Right-handed alpha
Helix 9
AA9
A
261 270Right-handed alpha
Helix 10
AB1
A
279 291Right-handed alpha
Helix 11
AB2
A
341 353Right-handed alpha
Helix 12
AB3
A
353 360Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9V0M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 85first strand
Strand 2
A
111 122anti-parallel
Strand 3
A
327 336anti-parallel
Strand 4
A
318 321anti-parallel
Strand 5
A
160 165anti-parallel
Strand 6
A
143 148anti-parallel
Strand 7
A
6 10anti-parallel
Strand 8
A
13 24anti-parallel
Strand 9
A
55 65anti-parallel
Strand 10
A
41 46anti-parallel
Strand 11
A
300 305anti-parallel
Strand 12
A
310 314anti-parallel
Strand 13
A
168 173anti-parallel
Strand 14
A
176 180anti-parallel
Strand 15
A
251 255anti-parallel
Strand 16
A
227 232anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 85first strand
Strand 2
A
111 122anti-parallel
Strand 3
A
277 278anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 187first strand
Strand 2
A
244 248anti-parallel
Strand 3
A
237 240anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il