Analysis of interatomic Contacts of Structural Units in PDB entry:
9V0P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V0P entry

There are 9 chains in PDB entry 9V0P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	SER 124
L	ASP 1	LYS 112
A	GLN 26	LEU 513
D	GLN 1	SER 124
F	ASP 1	LYS 112
B	GLN 26	LEU 513
E	GLN 1	SER 124
G	ASP 1	LYS 112
C	GLN 26	LEU 513

There are 30 helices in PDB entry 9V0P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	97	Right-handed alpha
Helix 2	AA2	A	149	159	Right-handed alpha
Helix 3	AA3	A	162	170	Right-handed alpha
Helix 4	AA4	A	197	202	Right-handed alpha
Helix 5	AA5	A	203	208	Right-handed alpha
Helix 6	AA6	A	217	240	Right-handed alpha
Helix 7	AA7	A	253	264	Right-handed alpha
Helix 8	AA8	A	267	276	Right-handed alpha
Helix 9	AA9	A	277	284	Right-handed alpha
Helix 10	AB1	A	492	513	Right-handed alpha
Helix 11	AB2	B	73	97	Right-handed alpha
Helix 12	AB3	B	149	159	Right-handed alpha
Helix 13	AB4	B	162	170	Right-handed alpha
Helix 14	AB5	B	197	202	Right-handed alpha
Helix 15	AB6	B	203	208	Right-handed alpha
Helix 16	AB7	B	217	240	Right-handed alpha
Helix 17	AB8	B	253	264	Right-handed alpha
Helix 18	AB9	B	267	276	Right-handed alpha
Helix 19	AC1	B	277	284	Right-handed alpha
Helix 20	AC2	B	492	513	Right-handed alpha
Helix 21	AC3	C	73	97	Right-handed alpha
Helix 22	AC4	C	149	159	Right-handed alpha
Helix 23	AC5	C	162	170	Right-handed alpha
Helix 24	AC6	C	197	202	Right-handed alpha
Helix 25	AC7	C	203	208	Right-handed alpha
Helix 26	AC8	C	217	240	Right-handed alpha
Helix 27	AC9	C	253	264	Right-handed alpha
Helix 28	AD1	C	267	276	Right-handed alpha
Helix 29	AD2	C	277	284	Right-handed alpha
Helix 30	AD3	C	492	513	Right-handed alpha

There are 32 sheets in PDB entry 9V0P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	92	96	anti-parallel
Strand 4	H	36	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	23	first strand
Strand 2	H	78	84	anti-parallel
Strand 3	H	68	73	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	103	first strand
Strand 2	H	108	113	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	75	80	anti-parallel
Strand 4	L	67	70	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	50	53	first strand
Strand 2	L	38	43	anti-parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	107	109	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	33	first strand
Strand 2	A	38	42	anti-parallel
Strand 3	A	315	318	anti-parallel
Strand 4	A	340	343	anti-parallel
Strand 5	A	349	352	anti-parallel
Strand 6	A	373	375	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	51	first strand
Strand 2	A	305	309	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	179	first strand
Strand 2	A	187	191	anti-parallel
Strand 3	A	54	58	parallel
Strand 4	A	296	302	anti-parallel
Strand 5	A	286	293	anti-parallel
Strand 6	A	243	244	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	407	first strand
Strand 2	A	411	416	anti-parallel
Strand 3	A	438	443	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	425	first strand
Strand 2	A	449	452	anti-parallel
Strand 3	A	455	457	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	118	122	parallel
Strand 3	D	92	96	anti-parallel
Strand 4	D	36	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	23	first strand
Strand 2	D	78	84	anti-parallel
Strand 3	D	68	73	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	103	first strand
Strand 2	D	108	113	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	19	24	anti-parallel
Strand 3	F	75	80	anti-parallel
Strand 4	F	67	70	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	59	first strand
Strand 2	F	50	54	anti-parallel
Strand 3	F	38	43	anti-parallel
Strand 4	F	89	95	anti-parallel
Strand 5	F	107	109	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	33	first strand
Strand 2	B	38	42	anti-parallel
Strand 3	B	315	318	anti-parallel
Strand 4	B	340	343	anti-parallel
Strand 5	B	349	352	anti-parallel
Strand 6	B	373	375	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	305	309	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	179	first strand
Strand 2	B	187	191	anti-parallel
Strand 3	B	54	58	parallel
Strand 4	B	296	302	anti-parallel
Strand 5	B	286	293	anti-parallel
Strand 6	B	243	244	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	333	334	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	411	416	anti-parallel
Strand 3	B	438	443	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	425	first strand
Strand 2	B	449	452	anti-parallel
Strand 3	B	455	457	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	118	122	parallel
Strand 3	E	92	96	anti-parallel
Strand 4	E	36	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	23	first strand
Strand 2	E	78	84	anti-parallel
Strand 3	E	68	73	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	103	first strand
Strand 2	E	108	113	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	7	first strand
Strand 2	G	19	24	anti-parallel
Strand 3	G	75	80	anti-parallel
Strand 4	G	67	70	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	59	first strand
Strand 2	G	50	54	anti-parallel
Strand 3	G	38	43	anti-parallel
Strand 4	G	89	95	anti-parallel
Strand 5	G	107	109	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	33	first strand
Strand 2	C	38	42	anti-parallel
Strand 3	C	315	318	anti-parallel
Strand 4	C	340	343	anti-parallel
Strand 5	C	349	352	anti-parallel
Strand 6	C	373	375	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	305	309	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	179	first strand
Strand 2	C	187	191	anti-parallel
Strand 3	C	54	58	parallel
Strand 4	C	296	302	anti-parallel
Strand 5	C	286	293	anti-parallel
Strand 6	C	243	244	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	333	334	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	407	first strand
Strand 2	C	411	416	anti-parallel
Strand 3	C	438	443	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	425	first strand
Strand 2	C	449	452	anti-parallel
Strand 3	C	455	457	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V0P

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V0P