Analysis of interatomic Contacts of Structural Units in PDB entry:
9V0Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V0Q entry

There are 9 chains in PDB entry 9V0Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 26	LEU 513
A	GLN 1	SER 126
C	GLN 1	LEU 110
F	GLN 26	LEU 513
D	GLN 1	SER 126
H	GLN 1	LEU 110
G	GLN 26	LEU 513
E	GLN 1	SER 126
I	GLN 1	LEU 110

There are 48 helices in PDB entry 9V0Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	78	97	Right-handed alpha
Helix 2	AA2	B	149	159	Right-handed alpha
Helix 3	AA3	B	163	171	Right-handed alpha
Helix 4	AA4	B	195	202	Right-handed alpha
Helix 5	AA5	B	203	208	Right-handed alpha
Helix 6	AA6	B	216	240	Right-handed alpha
Helix 7	AA7	B	253	262	Right-handed alpha
Helix 8	AA8	B	267	276	Right-handed alpha
Helix 9	AA9	B	277	284	Right-handed alpha
Helix 10	AB1	B	292	296	Right-handed 310
Helix 11	AB2	B	379	385	Right-handed alpha
Helix 12	AB3	B	445	447	Right-handed 310
Helix 13	AB4	B	473	477	Right-handed 310
Helix 14	AB5	B	491	513	Right-handed alpha
Helix 15	AB6	A	87	91	Right-handed 310
Helix 16	AB7	C	81	85	Right-handed 310
Helix 17	AB8	F	74	97	Right-handed alpha
Helix 18	AB9	F	149	159	Right-handed alpha
Helix 19	AC1	F	163	171	Right-handed alpha
Helix 20	AC2	F	195	202	Right-handed alpha
Helix 21	AC3	F	203	208	Right-handed alpha
Helix 22	AC4	F	217	240	Right-handed alpha
Helix 23	AC5	F	253	262	Right-handed alpha
Helix 24	AC6	F	267	276	Right-handed alpha
Helix 25	AC7	F	277	284	Right-handed alpha
Helix 26	AC8	F	292	294	Right-handed 310
Helix 27	AC9	F	379	385	Right-handed alpha
Helix 28	AD1	F	445	447	Right-handed 310
Helix 29	AD2	F	473	477	Right-handed 310
Helix 30	AD3	F	491	513	Right-handed alpha
Helix 31	AD4	D	87	91	Right-handed 310
Helix 32	AD5	H	81	85	Right-handed 310
Helix 33	AD6	G	74	97	Right-handed alpha
Helix 34	AD7	G	149	159	Right-handed alpha
Helix 35	AD8	G	163	171	Right-handed alpha
Helix 36	AD9	G	195	202	Right-handed alpha
Helix 37	AE1	G	203	208	Right-handed alpha
Helix 38	AE2	G	217	240	Right-handed alpha
Helix 39	AE3	G	253	262	Right-handed alpha
Helix 40	AE4	G	267	276	Right-handed alpha
Helix 41	AE5	G	277	284	Right-handed alpha
Helix 42	AE6	G	292	294	Right-handed 310
Helix 43	AE7	G	379	385	Right-handed alpha
Helix 44	AE8	G	445	447	Right-handed 310
Helix 45	AE9	G	473	477	Right-handed 310
Helix 46	AF1	G	491	513	Right-handed alpha
Helix 47	AF2	E	106	110	Right-handed 310
Helix 48	AF3	I	81	85	Right-handed 310

There are 38 sheets in PDB entry 9V0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	375	first strand
Strand 2	B	349	352	anti-parallel
Strand 3	B	340	343	anti-parallel
Strand 4	B	313	318	anti-parallel
Strand 5	B	38	42	anti-parallel
Strand 6	B	29	32	anti-parallel
Strand 7	B	465	468	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	177	first strand
Strand 2	B	189	194	anti-parallel
Strand 3	B	55	60	parallel
Strand 4	B	298	301	anti-parallel
Strand 5	B	287	289	anti-parallel
Strand 6	B	243	244	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	336	first strand
Strand 2	B	395	398	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	364	366	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	407	first strand
Strand 2	B	411	414	anti-parallel
Strand 3	B	440	443	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	433	first strand
Strand 2	B	422	426	anti-parallel
Strand 3	B	449	452	anti-parallel
Strand 4	B	455	458	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	120	124	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	45	50	anti-parallel
Strand 6	A	59	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	120	124	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	115	116	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	78	83	anti-parallel
Strand 3	A	68	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	105	109	parallel
Strand 3	C	86	94	anti-parallel
Strand 4	C	36	40	anti-parallel
Strand 5	C	48	50	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	105	109	parallel
Strand 3	C	86	94	anti-parallel
Strand 4	C	98	100	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	23	first strand
Strand 2	C	72	76	anti-parallel
Strand 3	C	65	69	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	32	first strand
Strand 2	F	465	468	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	40	first strand
Strand 2	F	313	318	anti-parallel
Strand 3	F	340	343	anti-parallel
Strand 4	F	349	352	anti-parallel
Strand 5	F	373	375	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	177	first strand
Strand 2	F	189	194	anti-parallel
Strand 3	F	55	60	parallel
Strand 4	F	296	301	anti-parallel
Strand 5	F	287	291	anti-parallel
Strand 6	F	243	244	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	333	336	first strand
Strand 2	F	395	398	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	359	361	first strand
Strand 2	F	364	366	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	405	407	first strand
Strand 2	F	411	414	anti-parallel
Strand 3	F	440	443	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	430	434	first strand
Strand 2	F	422	426	anti-parallel
Strand 3	F	449	452	anti-parallel
Strand 4	F	455	458	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	120	123	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	50	anti-parallel
Strand 6	D	59	60	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	120	123	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	115	116	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	21	first strand
Strand 2	D	78	83	anti-parallel
Strand 3	D	68	73	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	86	94	anti-parallel
Strand 4	H	36	40	anti-parallel
Strand 5	H	47	50	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	86	94	anti-parallel
Strand 4	H	98	100	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	23	first strand
Strand 2	H	72	77	anti-parallel
Strand 3	H	64	69	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	465	468	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	40	first strand
Strand 2	G	313	318	anti-parallel
Strand 3	G	340	343	anti-parallel
Strand 4	G	349	352	anti-parallel
Strand 5	G	373	375	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	176	180	first strand
Strand 2	G	186	194	anti-parallel
Strand 3	G	55	60	parallel
Strand 4	G	296	301	anti-parallel
Strand 5	G	287	289	anti-parallel
Strand 6	G	243	244	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	333	336	first strand
Strand 2	G	395	398	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	359	361	first strand
Strand 2	G	364	366	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	405	407	first strand
Strand 2	G	411	414	anti-parallel
Strand 3	G	440	443	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	430	434	first strand
Strand 2	G	422	426	anti-parallel
Strand 3	G	449	452	anti-parallel
Strand 4	G	455	458	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	120	124	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	120	124	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	115	116	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	23	first strand
Strand 2	E	78	83	anti-parallel
Strand 3	E	68	73	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	12	first strand
Strand 2	I	105	109	parallel
Strand 3	I	86	94	anti-parallel
Strand 4	I	36	39	anti-parallel
Strand 5	I	47	50	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	12	first strand
Strand 2	I	105	109	parallel
Strand 3	I	86	94	anti-parallel
Strand 4	I	98	100	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	23	first strand
Strand 2	I	72	77	anti-parallel
Strand 3	I	65	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V0Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V0Q