Analysis of interatomic Contacts of Structural Units in PDB entry:
9V0U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9V0U entry

There are 4 chains in PDB entry 9V0U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 ASN 546THR 827
A
 ASP 9MET 228
G
 SER 8ARG 62
C
 LEU 4ASN 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9V0U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
R
546 551Right-handed 310
Helix 2
AA2
R
559 591Right-handed alpha
Helix 3
AA3
R
601 625Right-handed alpha
Helix 4
AA4
R
629 662Right-handed alpha
Helix 5
AA5
R
671 695Right-handed alpha
Helix 6
AA6
R
696 698Right-handed 310
Helix 7
AA7
R
713 740Right-handed alpha
Helix 8
AA8
R
741 743Right-handed 310
Helix 9
AA9
R
756 770Right-handed alpha
Helix 10
AB1
R
773 778Right-handed alpha
Helix 11
AB2
R
785 795Right-handed alpha
Helix 12
AB3
R
797 807Right-handed alpha
Helix 13
AB4
R
810 826Right-handed alpha
Helix 14
AB5
A
10 33Right-handed alpha
Helix 15
AB6
A
41 44Right-handed 310
Helix 16
AB7
A
45 55Right-handed alpha
Helix 17
AB8
A
93 98Right-handed alpha
Helix 18
AB9
A
99 101Right-handed 310
Helix 19
AC1
A
114 116Right-handed 310
Helix 20
AC2
A
117 130Right-handed alpha
Helix 21
AC3
A
147 153Right-handed alpha
Helix 22
AC4
A
157 162Right-handed alpha
Helix 23
AC5
A
171 187Right-handed alpha
Helix 24
AC6
A
206 228Right-handed alpha
Helix 25
AC7
G
9 24Right-handed alpha
Helix 26
AC8
G
29 44Right-handed alpha
Helix 27
AC9
C
5 26Right-handed alpha
Helix 28
AD1
C
29 34Right-handed alpha
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There are 8 sheets in PDB entry 9V0U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
83 86anti-parallel
Strand 3
A
36 39parallel
Strand 4
A
105 111parallel
Strand 5
A
138 144parallel
Strand 6
A
195 199parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 63first strand
Strand 2
C
69 74anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
88 94anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 105first strand
Strand 2
C
111 116anti-parallel
Strand 3
C
122 125anti-parallel
Strand 4
C
134 138anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 151first strand
Strand 2
C
157 160anti-parallel
Strand 3
C
165 168anti-parallel
Strand 4
C
178 181anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
189 192first strand
Strand 2
C
198 202anti-parallel
Strand 3
C
207 212anti-parallel
Strand 4
C
218 223anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 234first strand
Strand 2
C
240 245anti-parallel
Strand 3
C
250 254anti-parallel
Strand 4
C
259 264anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
276 278first strand
Strand 2
C
284 287anti-parallel
Strand 3
C
293 298anti-parallel
Strand 4
C
307 309anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
315 320first strand
Strand 2
C
327 331anti-parallel
Strand 3
C
336 339anti-parallel
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