Analysis of interatomic Contacts of Structural Units in PDB entry:
9V0W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9V0W entry

There are 2 chains in PDB entry 9V0W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3THR 359
B
 LYS 3LEU 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9V0W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 39Right-handed alpha
Helix 2
AA2
A
84 97Right-handed alpha
Helix 3
AA3
A
98 100Right-handed 310
Helix 4
AA4
A
109 116Right-handed alpha
Helix 5
AA5
A
117 119Right-handed 310
Helix 6
AA6
A
133 147Right-handed alpha
Helix 7
AA7
A
155 162Right-handed alpha
Helix 8
AA8
A
164 168Right-handed 310
Helix 9
AA9
A
176 180Right-handed 310
Helix 10
AB1
A
202 214Right-handed alpha
Helix 11
AB2
A
225 236Right-handed alpha
Helix 12
AB3
A
248 257Right-handed alpha
Helix 13
AB4
A
274 282Right-handed alpha
Helix 14
AB5
A
293 298Right-handed alpha
Helix 15
AB6
A
311 321Right-handed alpha
Helix 16
AB7
A
322 325Right-handed 310
Helix 17
AB8
A
326 337Right-handed alpha
Helix 18
AB9
A
339 359Right-handed alpha
Helix 19
AC1
B
23 39Right-handed alpha
Helix 20
AC2
B
84 97Right-handed alpha
Helix 21
AC3
B
98 100Right-handed 310
Helix 22
AC4
B
109 115Right-handed alpha
Helix 23
AC5
B
116 119Right-handed 310
Helix 24
AC6
B
133 147Right-handed alpha
Helix 25
AC7
B
155 161Right-handed alpha
Helix 26
AC8
B
164 168Right-handed 310
Helix 27
AC9
B
176 180Right-handed 310
Helix 28
AD1
B
202 214Right-handed alpha
Helix 29
AD2
B
225 236Right-handed alpha
Helix 30
AD3
B
248 257Right-handed alpha
Helix 31
AD4
B
273 282Right-handed alpha
Helix 32
AD5
B
293 298Right-handed alpha
Helix 33
AD6
B
311 321Right-handed alpha
Helix 34
AD7
B
322 325Right-handed 310
Helix 35
AD8
B
326 337Right-handed alpha
Helix 36
AD9
B
339 360Right-handed alpha
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There are 4 sheets in PDB entry 9V0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
42 48parallel
Strand 3
A
6 10parallel
Strand 4
A
102 105parallel
Strand 5
A
123 126parallel
Strand 6
A
151 153parallel
Strand 7
A
169 170parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 243first strand
Strand 2
A
217 220parallel
Strand 3
A
191 194parallel
Strand 4
A
261 264parallel
Strand 5
A
286 289parallel
Strand 6
A
304 307parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
42 48parallel
Strand 3
B
6 10parallel
Strand 4
B
102 105parallel
Strand 5
B
123 127parallel
Strand 6
B
151 153parallel
Strand 7
B
169 170parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 243first strand
Strand 2
B
217 220parallel
Strand 3
B
191 194parallel
Strand 4
B
261 264parallel
Strand 5
B
286 289parallel
Strand 6
B
304 307parallel
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