Analysis of interatomic Contacts of Structural Units in PDB entry:
9V12

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V12 entry

There are 16 chains in PDB entry 9V12 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	ALA 2	LEU 181
K	ALA 2	LEU 181
M	ALA 2	LEU 181
O	ALA 2	LEU 181
R	ALA 2	LEU 181
T	ALA 2	LEU 181
V	ALA 2	LEU 181
X	ALA 2	LEU 181
i	THR 2	ALA 278
j	THR 2	ALA 278
k	THR 2	ALA 278
l	THR 2	ALA 278
m	THR 2	ALA 278
n	THR 2	ALA 278
o	THR 2	ALA 278
p	THR 2	ALA 278

There are202 helices in PDB entry 9V12. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	11	22	Right-handed alpha
Helix 2	AA2	I	42	59	Right-handed alpha
Helix 3	AA3	I	78	81	Right-handed 310
Helix 4	AA4	I	82	89	Right-handed alpha
Helix 5	AA5	I	91	95	Right-handed 310
Helix 6	AA6	I	158	163	Right-handed alpha
Helix 7	AA7	I	164	166	Right-handed 310
Helix 8	AA8	I	167	180	Right-handed alpha
Helix 9	AA9	K	11	22	Right-handed alpha
Helix 10	AB1	K	42	59	Right-handed alpha
Helix 11	AB2	K	78	81	Right-handed 310
Helix 12	AB3	K	82	89	Right-handed alpha
Helix 13	AB4	K	91	95	Right-handed 310
Helix 14	AB5	K	158	163	Right-handed alpha
Helix 15	AB6	K	164	166	Right-handed 310
Helix 16	AB7	K	167	180	Right-handed alpha
Helix 17	AB8	M	11	22	Right-handed alpha
Helix 18	AB9	M	42	59	Right-handed alpha
Helix 19	AC1	M	78	81	Right-handed 310
Helix 20	AC2	M	82	89	Right-handed alpha
Helix 21	AC3	M	91	95	Right-handed 310
Helix 22	AC4	M	158	163	Right-handed alpha
Helix 23	AC5	M	164	166	Right-handed 310
Helix 24	AC6	M	167	180	Right-handed alpha
Helix 25	AC7	O	11	22	Right-handed alpha
Helix 26	AC8	O	42	59	Right-handed alpha
Helix 27	AC9	O	78	81	Right-handed 310
Helix 28	AD1	O	82	89	Right-handed alpha
Helix 29	AD2	O	91	95	Right-handed 310
Helix 30	AD3	O	158	163	Right-handed alpha
Helix 31	AD4	O	164	166	Right-handed 310
Helix 32	AD5	O	167	180	Right-handed alpha
Helix 33	AD6	R	11	22	Right-handed alpha
Helix 34	AD7	R	42	59	Right-handed alpha
Helix 35	AD8	R	78	81	Right-handed 310
Helix 36	AD9	R	82	89	Right-handed alpha
Helix 37	AE1	R	91	95	Right-handed 310
Helix 38	AE2	R	158	163	Right-handed alpha
Helix 39	AE3	R	164	166	Right-handed 310
Helix 40	AE4	R	167	180	Right-handed alpha
Helix 41	AE5	T	11	22	Right-handed alpha
Helix 42	AE6	T	42	59	Right-handed alpha
Helix 43	AE7	T	78	81	Right-handed 310
Helix 44	AE8	T	82	89	Right-handed alpha
Helix 45	AE9	T	91	95	Right-handed 310
Helix 46	AF1	T	158	163	Right-handed alpha
Helix 47	AF2	T	164	166	Right-handed 310
Helix 48	AF3	T	167	180	Right-handed alpha
Helix 49	AF4	V	11	22	Right-handed alpha
Helix 50	AF5	V	42	59	Right-handed alpha
Helix 51	AF6	V	78	81	Right-handed 310
Helix 52	AF7	V	82	89	Right-handed alpha
Helix 53	AF8	V	91	95	Right-handed 310
Helix 54	AF9	V	158	163	Right-handed alpha
Helix 55	AG1	V	164	166	Right-handed 310
Helix 56	AG2	V	167	180	Right-handed alpha
Helix 57	AG3	X	11	22	Right-handed alpha
Helix 58	AG4	X	42	59	Right-handed alpha
Helix 59	AG5	X	78	81	Right-handed 310
Helix 60	AG6	X	82	89	Right-handed alpha
Helix 61	AG7	X	91	95	Right-handed 310
Helix 62	AG8	X	158	163	Right-handed alpha
Helix 63	AG9	X	164	166	Right-handed 310
Helix 64	AH1	X	167	180	Right-handed alpha
Helix 65	AH2	i	5	19	Right-handed alpha
Helix 66	AH3	i	28	35	Right-handed 310
Helix 67	AH4	i	38	51	Right-handed alpha
Helix 68	AH5	i	53	58	Right-handed alpha
Helix 69	AH6	i	62	72	Right-handed alpha
Helix 70	AH7	i	76	90	Right-handed alpha
Helix 71	AH8	i	91	100	Right-handed alpha
Helix 72	AH9	i	101	109	Right-handed alpha
Helix 73	AI1	i	124	131	Right-handed alpha
Helix 74	AI2	i	140	146	Right-handed alpha
Helix 75	AI3	i	164	168	Right-handed 310
Helix 76	AI4	i	171	178	Right-handed alpha
Helix 77	AI5	i	179	181	Right-handed 310
Helix 78	AI6	i	183	193	Right-handed alpha
Helix 79	AI7	i	207	224	Right-handed alpha
Helix 80	AI8	i	246	251	Right-handed alpha
Helix 81	AI9	i	265	278	Right-handed alpha
Helix 82	AJ1	j	5	19	Right-handed alpha
Helix 83	AJ2	j	28	35	Right-handed 310
Helix 84	AJ3	j	38	51	Right-handed alpha
Helix 85	AJ4	j	53	58	Right-handed alpha
Helix 86	AJ5	j	62	72	Right-handed alpha
Helix 87	AJ6	j	76	90	Right-handed alpha
Helix 88	AJ7	j	91	100	Right-handed alpha
Helix 89	AJ8	j	101	109	Right-handed alpha
Helix 90	AJ9	j	124	131	Right-handed alpha
Helix 91	AK1	j	140	146	Right-handed alpha
Helix 92	AK2	j	164	168	Right-handed 310
Helix 93	AK3	j	171	178	Right-handed alpha
Helix 94	AK4	j	179	181	Right-handed 310
Helix 95	AK5	j	183	193	Right-handed alpha
Helix 96	AK6	j	207	224	Right-handed alpha
Helix 97	AK7	j	246	251	Right-handed alpha
Helix 98	AK8	j	265	278	Right-handed alpha
Helix 99	AK9	k	5	19	Right-handed alpha
Helix 100	AL1	k	28	35	Right-handed 310
Helix 101	AL2	k	38	51	Right-handed alpha
Helix 102	AL3	k	53	58	Right-handed alpha
Helix 103	AL4	k	59	61	Right-handed 310
Helix 104	AL5	k	62	72	Right-handed alpha
Helix 105	AL6	k	76	90	Right-handed alpha
Helix 106	AL7	k	91	100	Right-handed alpha
Helix 107	AL8	k	101	109	Right-handed alpha
Helix 108	AL9	k	124	131	Right-handed alpha
Helix 109	AM1	k	140	146	Right-handed alpha
Helix 110	AM2	k	164	168	Right-handed 310
Helix 111	AM3	k	171	178	Right-handed alpha
Helix 112	AM4	k	179	181	Right-handed 310
Helix 113	AM5	k	183	193	Right-handed alpha
Helix 114	AM6	k	207	224	Right-handed alpha
Helix 115	AM7	k	246	251	Right-handed alpha
Helix 116	AM8	k	265	278	Right-handed alpha
Helix 117	AM9	l	5	19	Right-handed alpha
Helix 118	AN1	l	28	35	Right-handed 310
Helix 119	AN2	l	38	51	Right-handed alpha
Helix 120	AN3	l	53	58	Right-handed alpha
Helix 121	AN4	l	62	72	Right-handed alpha
Helix 122	AN5	l	76	90	Right-handed alpha
Helix 123	AN6	l	91	100	Right-handed alpha
Helix 124	AN7	l	101	109	Right-handed alpha
Helix 125	AN8	l	124	131	Right-handed alpha
Helix 126	AN9	l	140	146	Right-handed alpha
Helix 127	AO1	l	164	168	Right-handed 310
Helix 128	AO2	l	171	178	Right-handed alpha
Helix 129	AO3	l	179	181	Right-handed 310
Helix 130	AO4	l	183	193	Right-handed alpha
Helix 131	AO5	l	207	224	Right-handed alpha
Helix 132	AO6	l	246	251	Right-handed alpha
Helix 133	AO7	l	265	278	Right-handed alpha
Helix 134	AO8	m	5	19	Right-handed alpha
Helix 135	AO9	m	28	35	Right-handed 310
Helix 136	AP1	m	38	51	Right-handed alpha
Helix 137	AP2	m	53	58	Right-handed alpha
Helix 138	AP3	m	62	72	Right-handed alpha
Helix 139	AP4	m	76	90	Right-handed alpha
Helix 140	AP5	m	91	100	Right-handed alpha
Helix 141	AP6	m	101	109	Right-handed alpha
Helix 142	AP7	m	124	131	Right-handed alpha
Helix 143	AP8	m	140	146	Right-handed alpha
Helix 144	AP9	m	164	168	Right-handed 310
Helix 145	AQ1	m	171	178	Right-handed alpha
Helix 146	AQ2	m	179	181	Right-handed 310
Helix 147	AQ3	m	183	193	Right-handed alpha
Helix 148	AQ4	m	207	224	Right-handed alpha
Helix 149	AQ5	m	246	251	Right-handed alpha
Helix 150	AQ6	m	265	278	Right-handed alpha
Helix 151	AQ7	n	5	19	Right-handed alpha
Helix 152	AQ8	n	28	35	Right-handed 310
Helix 153	AQ9	n	38	51	Right-handed alpha
Helix 154	AR1	n	53	58	Right-handed alpha
Helix 155	AR2	n	62	72	Right-handed alpha
Helix 156	AR3	n	76	90	Right-handed alpha
Helix 157	AR4	n	91	100	Right-handed alpha
Helix 158	AR5	n	101	109	Right-handed alpha
Helix 159	AR6	n	124	131	Right-handed alpha
Helix 160	AR7	n	140	146	Right-handed alpha
Helix 161	AR8	n	164	168	Right-handed 310
Helix 162	AR9	n	171	178	Right-handed alpha
Helix 163	AS1	n	179	181	Right-handed 310
Helix 164	AS2	n	183	193	Right-handed alpha
Helix 165	AS3	n	207	224	Right-handed alpha
Helix 166	AS4	n	246	251	Right-handed alpha
Helix 167	AS5	n	265	278	Right-handed alpha
Helix 168	AS6	o	5	19	Right-handed alpha
Helix 169	AS7	o	28	35	Right-handed 310
Helix 170	AS8	o	38	51	Right-handed alpha
Helix 171	AS9	o	53	59	Right-handed alpha
Helix 172	AT1	o	62	72	Right-handed alpha
Helix 173	AT2	o	76	90	Right-handed alpha
Helix 174	AT3	o	91	100	Right-handed alpha
Helix 175	AT4	o	101	109	Right-handed alpha
Helix 176	AT5	o	124	131	Right-handed alpha
Helix 177	AT6	o	140	146	Right-handed alpha
Helix 178	AT7	o	164	168	Right-handed 310
Helix 179	AT8	o	171	178	Right-handed alpha
Helix 180	AT9	o	179	181	Right-handed 310
Helix 181	AU1	o	183	193	Right-handed alpha
Helix 182	AU2	o	207	224	Right-handed alpha
Helix 183	AU3	o	246	251	Right-handed alpha
Helix 184	AU4	o	265	278	Right-handed alpha
Helix 185	AU5	p	5	19	Right-handed alpha
Helix 186	AU6	p	28	35	Right-handed 310
Helix 187	AU7	p	38	51	Right-handed alpha
Helix 188	AU8	p	53	58	Right-handed alpha
Helix 189	AU9	p	59	61	Right-handed 310
Helix 190	AV1	p	62	72	Right-handed alpha
Helix 191	AV2	p	76	90	Right-handed alpha
Helix 192	AV3	p	91	100	Right-handed alpha
Helix 193	AV4	p	101	109	Right-handed alpha
Helix 194	AV5	p	124	131	Right-handed alpha
Helix 195	AV6	p	140	146	Right-handed alpha
Helix 196	AV7	p	164	168	Right-handed 310
Helix 197	AV8	p	171	178	Right-handed alpha
Helix 198	AV9	p	179	181	Right-handed 310
Helix 199	AW1	p	183	193	Right-handed alpha
Helix 200	AW2	p	207	224	Right-handed alpha
Helix 201	AW3	p	246	251	Right-handed alpha
Helix 202	AW4	p	265	278	Right-handed alpha

There are 16 sheets in PDB entry 9V12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	28	31	first strand
Strand 2	I	5	8	parallel
Strand 3	I	62	71	parallel
Strand 4	I	103	113	anti-parallel
Strand 5	I	118	129	anti-parallel
Strand 6	I	145	147	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	28	31	first strand
Strand 2	K	5	8	parallel
Strand 3	K	62	71	parallel
Strand 4	K	103	113	anti-parallel
Strand 5	K	118	129	anti-parallel
Strand 6	K	145	147	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	28	31	first strand
Strand 2	M	5	8	parallel
Strand 3	M	62	71	parallel
Strand 4	M	103	113	anti-parallel
Strand 5	M	118	129	anti-parallel
Strand 6	M	145	147	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	28	31	first strand
Strand 2	O	5	8	parallel
Strand 3	O	62	71	parallel
Strand 4	O	103	113	anti-parallel
Strand 5	O	118	129	anti-parallel
Strand 6	O	145	147	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	28	31	first strand
Strand 2	R	5	8	parallel
Strand 3	R	62	71	parallel
Strand 4	R	103	113	anti-parallel
Strand 5	R	118	129	anti-parallel
Strand 6	R	145	147	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	28	31	first strand
Strand 2	T	5	8	parallel
Strand 3	T	62	71	parallel
Strand 4	T	103	113	anti-parallel
Strand 5	T	118	129	anti-parallel
Strand 6	T	145	147	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	28	31	first strand
Strand 2	V	5	8	parallel
Strand 3	V	62	71	parallel
Strand 4	V	103	113	anti-parallel
Strand 5	V	118	129	anti-parallel
Strand 6	V	145	147	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	28	31	first strand
Strand 2	X	5	8	parallel
Strand 3	X	62	71	parallel
Strand 4	X	103	113	anti-parallel
Strand 5	X	118	129	anti-parallel
Strand 6	X	145	147	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	135	138	first strand
Strand 2	i	153	157	parallel
Strand 3	i	114	117	parallel
Strand 4	i	22	26	parallel
Strand 5	i	197	201	parallel
Strand 6	i	236	240	parallel
Strand 7	i	256	260	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	135	138	first strand
Strand 2	j	153	157	parallel
Strand 3	j	114	117	parallel
Strand 4	j	22	26	parallel
Strand 5	j	197	201	parallel
Strand 6	j	236	240	parallel
Strand 7	j	256	260	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	135	138	first strand
Strand 2	k	153	157	parallel
Strand 3	k	114	117	parallel
Strand 4	k	22	26	parallel
Strand 5	k	197	201	parallel
Strand 6	k	236	240	parallel
Strand 7	k	256	260	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	135	138	first strand
Strand 2	l	153	157	parallel
Strand 3	l	114	117	parallel
Strand 4	l	22	26	parallel
Strand 5	l	197	201	parallel
Strand 6	l	236	240	parallel
Strand 7	l	256	260	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	135	138	first strand
Strand 2	m	153	157	parallel
Strand 3	m	114	117	parallel
Strand 4	m	22	26	parallel
Strand 5	m	197	201	parallel
Strand 6	m	236	240	parallel
Strand 7	m	256	260	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	135	138	first strand
Strand 2	n	153	157	parallel
Strand 3	n	114	117	parallel
Strand 4	n	22	26	parallel
Strand 5	n	197	201	parallel
Strand 6	n	236	240	parallel
Strand 7	n	256	260	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	135	138	first strand
Strand 2	o	153	157	parallel
Strand 3	o	114	117	parallel
Strand 4	o	22	26	parallel
Strand 5	o	197	201	parallel
Strand 6	o	236	240	parallel
Strand 7	o	256	260	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	135	138	first strand
Strand 2	p	153	157	parallel
Strand 3	p	114	117	parallel
Strand 4	p	22	26	parallel
Strand 5	p	197	201	parallel
Strand 6	p	236	240	parallel
Strand 7	p	256	260	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V12

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V12