Analysis of interatomic Contacts of Structural Units in PDB entry:
9V2R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V2R entry

There are 15 chains in PDB entry 9V2R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	SER 126
B	GLN 26	LEU 513
C	GLN 1	LEU 110
D	VAL 2	SER 122
E	GLN 1	LEU 110
F	GLN 1	SER 126
H	GLN 26	LEU 513
J	GLN 1	LEU 110
L	VAL 2	SER 122
N	GLN 1	LEU 110
G	GLN 1	SER 126
I	GLN 26	LEU 513
K	GLN 1	LEU 110
M	VAL 2	SER 122
O	GLN 1	LEU 110

There are 60 helices in PDB entry 9V2R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	87	91	Right-handed 310
Helix 2	AA2	B	77	97	Right-handed alpha
Helix 3	AA3	B	149	159	Right-handed alpha
Helix 4	AA4	B	163	171	Right-handed alpha
Helix 5	AA5	B	195	203	Right-handed alpha
Helix 6	AA6	B	203	208	Right-handed alpha
Helix 7	AA7	B	217	226	Right-handed alpha
Helix 8	AA8	B	227	241	Right-handed alpha
Helix 9	AA9	B	253	262	Right-handed alpha
Helix 10	AB1	B	267	277	Right-handed alpha
Helix 11	AB2	B	277	285	Right-handed alpha
Helix 12	AB3	B	292	296	Right-handed 310
Helix 13	AB4	B	368	372	Right-handed 310
Helix 14	AB5	B	379	385	Right-handed alpha
Helix 15	AB6	B	445	447	Right-handed 310
Helix 16	AB7	B	473	478	Right-handed 310
Helix 17	AB8	B	491	513	Right-handed alpha
Helix 18	AB9	C	81	85	Right-handed 310
Helix 19	AC1	D	87	91	Right-handed 310
Helix 20	AC2	E	81	85	Right-handed 310
Helix 21	AC3	F	87	91	Right-handed 310
Helix 22	AC4	H	77	97	Right-handed alpha
Helix 23	AC5	H	149	159	Right-handed alpha
Helix 24	AC6	H	163	171	Right-handed alpha
Helix 25	AC7	H	195	203	Right-handed alpha
Helix 26	AC8	H	203	208	Right-handed alpha
Helix 27	AC9	H	217	226	Right-handed alpha
Helix 28	AD1	H	227	241	Right-handed alpha
Helix 29	AD2	H	253	262	Right-handed alpha
Helix 30	AD3	H	267	277	Right-handed alpha
Helix 31	AD4	H	277	285	Right-handed alpha
Helix 32	AD5	H	292	296	Right-handed 310
Helix 33	AD6	H	368	372	Right-handed 310
Helix 34	AD7	H	379	385	Right-handed alpha
Helix 35	AD8	H	445	447	Right-handed 310
Helix 36	AD9	H	473	478	Right-handed 310
Helix 37	AE1	H	492	513	Right-handed alpha
Helix 38	AE2	J	81	85	Right-handed 310
Helix 39	AE3	L	87	91	Right-handed 310
Helix 40	AE4	N	81	85	Right-handed 310
Helix 41	AE5	G	87	91	Right-handed 310
Helix 42	AE6	I	77	97	Right-handed alpha
Helix 43	AE7	I	149	159	Right-handed alpha
Helix 44	AE8	I	163	171	Right-handed alpha
Helix 45	AE9	I	195	203	Right-handed alpha
Helix 46	AF1	I	203	208	Right-handed alpha
Helix 47	AF2	I	217	226	Right-handed alpha
Helix 48	AF3	I	227	241	Right-handed alpha
Helix 49	AF4	I	253	262	Right-handed alpha
Helix 50	AF5	I	267	277	Right-handed alpha
Helix 51	AF6	I	277	285	Right-handed alpha
Helix 52	AF7	I	292	296	Right-handed 310
Helix 53	AF8	I	368	372	Right-handed 310
Helix 54	AF9	I	379	385	Right-handed alpha
Helix 55	AG1	I	445	447	Right-handed 310
Helix 56	AG2	I	473	478	Right-handed 310
Helix 57	AG3	I	491	513	Right-handed alpha
Helix 58	AG4	K	81	85	Right-handed 310
Helix 59	AG5	M	87	91	Right-handed 310
Helix 60	AG6	O	81	85	Right-handed 310

There are 57 sheets in PDB entry 9V2R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	80	83	anti-parallel
Strand 4	A	68	71	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	120	123	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	45	50	anti-parallel
Strand 6	A	59	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	120	123	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	115	116	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	465	468	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	313	318	anti-parallel
Strand 3	B	340	343	anti-parallel
Strand 4	B	348	352	anti-parallel
Strand 5	B	373	376	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	177	first strand
Strand 2	B	189	194	anti-parallel
Strand 3	B	55	60	parallel
Strand 4	B	298	301	anti-parallel
Strand 5	B	287	289	anti-parallel
Strand 6	B	243	244	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	333	336	anti-parallel
Strand 3	B	395	398	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	365	366	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	408	first strand
Strand 2	B	411	414	anti-parallel
Strand 3	B	440	443	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	434	first strand
Strand 2	B	422	426	anti-parallel
Strand 3	B	449	452	anti-parallel
Strand 4	B	455	458	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	105	108	parallel
Strand 3	C	86	94	anti-parallel
Strand 4	C	36	40	anti-parallel
Strand 5	C	47	50	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	105	108	parallel
Strand 3	C	86	94	anti-parallel
Strand 4	C	98	100	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	23	first strand
Strand 2	C	72	76	anti-parallel
Strand 3	C	65	69	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	116	119	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	52	anti-parallel
Strand 6	D	59	60	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	22	first strand
Strand 2	D	78	83	anti-parallel
Strand 3	D	68	73	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	23	first strand
Strand 2	E	72	77	anti-parallel
Strand 3	E	64	69	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	39	first strand
Strand 2	E	47	50	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	88	first strand
Strand 2	E	105	107	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	92	first strand
Strand 2	E	100	101	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	80	83	anti-parallel
Strand 4	F	68	71	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	120	124	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	45	50	anti-parallel
Strand 6	F	59	60	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	120	124	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	115	116	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	32	first strand
Strand 2	H	465	468	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	39	first strand
Strand 2	H	313	318	anti-parallel
Strand 3	H	340	343	anti-parallel
Strand 4	H	348	352	anti-parallel
Strand 5	H	373	376	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	176	177	first strand
Strand 2	H	189	194	anti-parallel
Strand 3	H	55	60	parallel
Strand 4	H	298	301	anti-parallel
Strand 5	H	287	289	anti-parallel
Strand 6	H	243	244	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	321	322	first strand
Strand 2	H	333	336	anti-parallel
Strand 3	H	394	398	anti-parallel
Strand 4	H	487	491	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	359	361	first strand
Strand 2	H	364	366	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	405	408	first strand
Strand 2	H	411	414	anti-parallel
Strand 3	H	440	443	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	430	434	first strand
Strand 2	H	422	426	anti-parallel
Strand 3	H	449	452	anti-parallel
Strand 4	H	455	458	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	11	first strand
Strand 2	J	105	108	parallel
Strand 3	J	86	94	anti-parallel
Strand 4	J	36	40	anti-parallel
Strand 5	J	47	50	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	11	first strand
Strand 2	J	105	108	parallel
Strand 3	J	86	94	anti-parallel
Strand 4	J	98	100	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	19	23	first strand
Strand 2	J	72	76	anti-parallel
Strand 3	J	65	69	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	7	first strand
Strand 2	L	19	22	anti-parallel
Strand 3	L	78	83	anti-parallel
Strand 4	L	68	73	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	116	119	parallel
Strand 3	L	92	99	anti-parallel
Strand 4	L	33	39	anti-parallel
Strand 5	L	45	52	anti-parallel
Strand 6	L	59	60	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	18	23	first strand
Strand 2	N	72	77	anti-parallel
Strand 3	N	64	69	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	37	38	first strand
Strand 2	N	48	50	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	86	88	first strand
Strand 2	N	105	107	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	91	92	first strand
Strand 2	N	100	101	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	79	83	anti-parallel
Strand 4	G	68	72	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	120	124	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	45	50	anti-parallel
Strand 6	G	59	60	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	32	first strand
Strand 2	I	465	468	parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	38	40	first strand
Strand 2	I	313	318	anti-parallel
Strand 3	I	340	343	anti-parallel
Strand 4	I	348	352	anti-parallel
Strand 5	I	373	376	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	176	177	first strand
Strand 2	I	189	194	anti-parallel
Strand 3	I	55	60	parallel
Strand 4	I	298	301	anti-parallel
Strand 5	I	287	289	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	321	322	first strand
Strand 2	I	333	336	anti-parallel
Strand 3	I	395	398	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	359	361	first strand
Strand 2	I	364	366	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	405	408	first strand
Strand 2	I	411	414	anti-parallel
Strand 3	I	440	443	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	430	434	first strand
Strand 2	I	422	426	anti-parallel
Strand 3	I	449	452	anti-parallel
Strand 4	I	455	458	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	11	first strand
Strand 2	K	105	108	parallel
Strand 3	K	86	94	anti-parallel
Strand 4	K	36	40	anti-parallel
Strand 5	K	47	50	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	11	first strand
Strand 2	K	105	108	parallel
Strand 3	K	86	94	anti-parallel
Strand 4	K	98	100	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	23	first strand
Strand 2	K	72	76	anti-parallel
Strand 3	K	65	69	anti-parallel

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There are 6 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	11	first strand
Strand 2	M	116	119	parallel
Strand 3	M	92	99	anti-parallel
Strand 4	M	33	39	anti-parallel
Strand 5	M	45	52	anti-parallel
Strand 6	M	59	60	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	11	first strand
Strand 2	M	116	119	parallel
Strand 3	M	92	99	anti-parallel
Strand 4	M	110	112	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	22	first strand
Strand 2	M	78	83	anti-parallel
Strand 3	M	68	73	anti-parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	18	23	first strand
Strand 2	O	72	77	anti-parallel
Strand 3	O	64	69	anti-parallel

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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	37	39	first strand
Strand 2	O	47	50	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	86	88	first strand
Strand 2	O	105	107	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	91	92	first strand
Strand 2	O	100	101	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V2R

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V2R