Analysis of interatomic Contacts of Structural Units in PDB entry:
9V2T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9V2T entry

There are 2 chains in PDB entry 9V2T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 19GLY 430
B
 GLU 19GLY 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9V2T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 30Right-handed alpha
Helix 2
AA2
A
32 42Right-handed alpha
Helix 3
AA3
A
60 69Right-handed alpha
Helix 4
AA4
A
89 98Right-handed alpha
Helix 5
AA5
A
105 110Right-handed alpha
Helix 6
AA6
A
111 115Right-handed 310
Helix 7
AA7
A
118 135Right-handed alpha
Helix 8
AA8
A
136 138Right-handed 310
Helix 9
AA9
A
139 152Right-handed alpha
Helix 10
AB1
A
153 158Right-handed 310
Helix 11
AB2
A
165 169Right-handed alpha
Helix 12
AB3
A
171 183Right-handed alpha
Helix 13
AB4
A
188 201Right-handed alpha
Helix 14
AB5
A
203 209Right-handed alpha
Helix 15
AB6
A
210 228Right-handed alpha
Helix 16
AB7
A
232 240Right-handed alpha
Helix 17
AB8
A
249 282Right-handed alpha
Helix 18
AB9
A
282 292Right-handed alpha
Helix 19
AC1
A
295 308Right-handed alpha
Helix 20
AC2
A
338 343Right-handed alpha
Helix 21
AC3
A
373 377Right-handed 310
Helix 22
AC4
A
380 399Right-handed alpha
Helix 23
AC5
A
407 411Right-handed 310
Helix 24
AC6
B
24 30Right-handed alpha
Helix 25
AC7
B
30 42Right-handed alpha
Helix 26
AC8
B
60 69Right-handed alpha
Helix 27
AC9
B
89 98Right-handed alpha
Helix 28
AD1
B
105 110Right-handed alpha
Helix 29
AD2
B
111 115Right-handed 310
Helix 30
AD3
B
118 135Right-handed alpha
Helix 31
AD4
B
136 138Right-handed 310
Helix 32
AD5
B
139 152Right-handed alpha
Helix 33
AD6
B
153 158Right-handed 310
Helix 34
AD7
B
165 169Right-handed alpha
Helix 35
AD8
B
171 183Right-handed alpha
Helix 36
AD9
B
185 187Right-handed 310
Helix 37
AE1
B
188 201Right-handed alpha
Helix 38
AE2
B
203 209Right-handed alpha
Helix 39
AE3
B
210 226Right-handed alpha
Helix 40
AE4
B
232 240Right-handed alpha
Helix 41
AE5
B
249 282Right-handed alpha
Helix 42
AE6
B
282 292Right-handed alpha
Helix 43
AE7
B
295 307Right-handed alpha
Helix 44
AE8
B
338 344Right-handed alpha
Helix 45
AE9
B
373 377Right-handed 310
Helix 46
AF1
B
378 379Right-handed 310
Helix 47
AF2
B
380 399Right-handed alpha
Helix 48
AF3
B
407 411Right-handed 310
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There are 6 sheets in PDB entry 9V2T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
54 58anti-parallel
Strand 3
A
334 337parallel
Strand 4
A
316 318anti-parallel
Strand 5
A
73 74anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
426 428anti-parallel
Strand 3
A
403 404anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
327 328anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 48first strand
Strand 2
B
54 58anti-parallel
Strand 3
B
334 337parallel
Strand 4
B
316 318anti-parallel
Strand 5
B
73 74anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 164first strand
Strand 2
B
426 428anti-parallel
Strand 3
B
403 404anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 324first strand
Strand 2
B
327 329anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il