Analysis of interatomic Contacts of Structural Units in PDB entry:
9V2V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V2V entry

There are 21 chains in PDB entry 9V2V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 662	PRO 1344
B	ARG 742	LYS 1325
C	ASP 9	HIS 393
D	SER 16	LYS 384
E	GLU 177	ASP 295
F	LYS 14	LEU 324
G	ARG 71	GLN 191
H	LEU 64	GLN 274
I	LEU 11	THR 115
J	SER 157	LEU 384
K	THR 243	LEU 491
O	ARG 11	PRO 117
P	LYS 28	SER 120
Q	LYS 37	ARG 134
R	LEU 22	PHE 100
S	ARG 11	PRO 117
T	THR 29	THR 119
U	LYS 37	GLU 133
V	LEU 22	PHE 100
X	T -79	G 75
Y	C -75	A 79

There are142 helices in PDB entry 9V2V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	663	674	Right-handed alpha
Helix 2	AA2	A	678	694	Right-handed alpha
Helix 3	AA3	A	698	711	Right-handed alpha
Helix 4	AA4	A	803	839	Right-handed alpha
Helix 5	AA5	A	842	847	Right-handed alpha
Helix 6	AA6	A	861	871	Right-handed alpha
Helix 7	AA7	A	875	886	Right-handed alpha
Helix 8	AA8	A	886	922	Right-handed alpha
Helix 9	AA9	A	923	928	Right-handed alpha
Helix 10	AB1	A	929	934	Right-handed alpha
Helix 11	AB2	A	934	943	Right-handed alpha
Helix 12	AB3	A	982	997	Right-handed alpha
Helix 13	AB4	A	1003	1023	Right-handed alpha
Helix 14	AB5	A	1075	1080	Right-handed alpha
Helix 15	AB6	A	1144	1163	Right-handed alpha
Helix 16	AB7	A	1164	1174	Right-handed alpha
Helix 17	AB8	A	1178	1183	Right-handed alpha
Helix 18	AB9	A	1189	1194	Right-handed alpha
Helix 19	AC1	A	1202	1217	Right-handed alpha
Helix 20	AC2	A	1220	1231	Right-handed alpha
Helix 21	AC3	A	1236	1240	Right-handed 310
Helix 22	AC4	A	1241	1259	Right-handed alpha
Helix 23	AC5	A	1259	1274	Right-handed alpha
Helix 24	AC6	A	1280	1294	Right-handed alpha
Helix 25	AC7	A	1330	1343	Right-handed alpha
Helix 26	AC8	B	803	814	Right-handed alpha
Helix 27	AC9	B	815	825	Right-handed alpha
Helix 28	AD1	B	827	839	Right-handed alpha
Helix 29	AD2	B	857	861	Right-handed 310
Helix 30	AD3	B	862	871	Right-handed alpha
Helix 31	AD4	B	874	876	Right-handed 310
Helix 32	AD5	B	877	886	Right-handed alpha
Helix 33	AD6	B	890	915	Right-handed alpha
Helix 34	AD7	B	915	920	Right-handed alpha
Helix 35	AD8	B	932	942	Right-handed alpha
Helix 36	AD9	B	948	952	Right-handed 310
Helix 37	AE1	B	953	961	Right-handed alpha
Helix 38	AE2	B	986	996	Right-handed alpha
Helix 39	AE3	B	1004	1007	Right-handed 310
Helix 40	AE4	B	1008	1013	Right-handed alpha
Helix 41	AE5	B	1028	1032	Right-handed 310
Helix 42	AE6	B	1141	1146	Right-handed alpha
Helix 43	AE7	B	1146	1156	Right-handed alpha
Helix 44	AE8	B	1164	1174	Right-handed alpha
Helix 45	AE9	B	1188	1193	Right-handed 310
Helix 46	AF1	B	1202	1213	Right-handed alpha
Helix 47	AF2	B	1226	1232	Right-handed alpha
Helix 48	AF3	B	1251	1256	Right-handed alpha
Helix 49	AF4	C	28	32	Right-handed 310
Helix 50	AF5	C	42	55	Right-handed alpha
Helix 51	AF6	C	70	75	Right-handed alpha
Helix 52	AF7	C	79	87	Right-handed alpha
Helix 53	AF8	C	93	97	Right-handed 310
Helix 54	AF9	C	98	103	Right-handed alpha
Helix 55	AG1	C	115	136	Right-handed alpha
Helix 56	AG2	C	164	174	Right-handed alpha
Helix 57	AG3	C	192	197	Right-handed alpha
Helix 58	AG4	C	243	260	Right-handed alpha
Helix 59	AG5	C	287	300	Right-handed alpha
Helix 60	AG6	C	314	330	Right-handed alpha
Helix 61	AG7	C	343	347	Right-handed 310
Helix 62	AG8	C	365	381	Right-handed alpha
Helix 63	AG9	C	382	384	Right-handed 310
Helix 64	AH1	D	42	49	Right-handed alpha
Helix 65	AH2	D	50	56	Right-handed alpha
Helix 66	AH3	D	70	74	Right-handed 310
Helix 67	AH4	D	79	87	Right-handed alpha
Helix 68	AH5	D	98	103	Right-handed alpha
Helix 69	AH6	D	115	136	Right-handed alpha
Helix 70	AH7	D	165	173	Right-handed alpha
Helix 71	AH8	D	247	259	Right-handed alpha
Helix 72	AH9	D	288	300	Right-handed alpha
Helix 73	AI1	D	317	330	Right-handed alpha
Helix 74	AI2	D	343	348	Right-handed 310
Helix 75	AI3	D	365	379	Right-handed alpha
Helix 76	AI4	D	380	384	Right-handed 310
Helix 77	AI5	E	178	211	Right-handed alpha
Helix 78	AI6	E	213	218	Right-handed alpha
Helix 79	AI7	E	226	283	Right-handed alpha
Helix 80	AI8	E	284	294	Right-handed alpha
Helix 81	AI9	F	14	16	Right-handed 310
Helix 82	AJ1	F	17	35	Right-handed alpha
Helix 83	AJ2	F	35	52	Right-handed alpha
Helix 84	AJ3	F	61	123	Right-handed alpha
Helix 85	AJ4	F	123	141	Right-handed alpha
Helix 86	AJ5	F	300	315	Right-handed alpha
Helix 87	AJ6	G	73	88	Right-handed alpha
Helix 88	AJ7	G	108	120	Right-handed alpha
Helix 89	AJ8	G	128	133	Right-handed alpha
Helix 90	AJ9	G	138	142	Right-handed 310
Helix 91	AK1	G	158	171	Right-handed alpha
Helix 92	AK2	H	70	76	Right-handed alpha
Helix 93	AK3	H	144	153	Right-handed alpha
Helix 94	AK4	H	179	184	Right-handed alpha
Helix 95	AK5	H	192	197	Right-handed 310
Helix 96	AK6	I	13	15	Right-handed 310
Helix 97	AK7	I	16	28	Right-handed alpha
Helix 98	AK8	I	30	40	Right-handed alpha
Helix 99	AK9	I	42	55	Right-handed alpha
Helix 100	AL1	I	62	115	Right-handed alpha
Helix 101	AL2	J	188	219	Right-handed alpha
Helix 102	AL3	J	227	232	Right-handed alpha
Helix 103	AL4	J	286	290	Right-handed 310
Helix 104	AL5	J	330	384	Right-handed alpha
Helix 105	AL6	K	244	252	Right-handed alpha
Helix 106	AL7	K	463	479	Right-handed alpha
Helix 107	AL8	O	16	21	Right-handed alpha
Helix 108	AL9	O	26	36	Right-handed alpha
Helix 109	AM1	O	46	73	Right-handed alpha
Helix 110	AM2	O	79	90	Right-handed alpha
Helix 111	AM3	O	90	97	Right-handed alpha
Helix 112	AM4	O	112	116	Right-handed 310
Helix 113	AM5	P	34	46	Right-handed alpha
Helix 114	AM6	P	52	81	Right-handed alpha
Helix 115	AM7	P	87	99	Right-handed alpha
Helix 116	AM8	P	100	120	Right-handed alpha
Helix 117	AM9	Q	44	56	Right-handed alpha
Helix 118	AN1	Q	63	77	Right-handed alpha
Helix 119	AN2	Q	85	114	Right-handed alpha
Helix 120	AN3	Q	120	131	Right-handed alpha
Helix 121	AN4	R	25	29	Right-handed 310
Helix 122	AN5	R	30	41	Right-handed alpha
Helix 123	AN6	R	50	76	Right-handed alpha
Helix 124	AN7	R	82	92	Right-handed alpha
Helix 125	AN8	S	16	22	Right-handed alpha
Helix 126	AN9	S	26	36	Right-handed alpha
Helix 127	AO1	S	46	65	Right-handed alpha
Helix 128	AO2	S	65	73	Right-handed alpha
Helix 129	AO3	S	79	90	Right-handed alpha
Helix 130	AO4	S	92	97	Right-handed alpha
Helix 131	AO5	T	34	46	Right-handed alpha
Helix 132	AO6	T	52	81	Right-handed alpha
Helix 133	AO7	T	87	99	Right-handed alpha
Helix 134	AO8	T	101	118	Right-handed alpha
Helix 135	AO9	U	44	56	Right-handed alpha
Helix 136	AP1	U	63	76	Right-handed alpha
Helix 137	AP2	U	85	114	Right-handed alpha
Helix 138	AP3	U	120	132	Right-handed alpha
Helix 139	AP4	V	25	29	Right-handed 310
Helix 140	AP5	V	30	41	Right-handed alpha
Helix 141	AP6	V	50	76	Right-handed alpha
Helix 142	AP7	V	82	92	Right-handed alpha

There are 17 sheets in PDB entry 9V2V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	977	978	first strand
Strand 2	A	1311	1317	anti-parallel
Strand 3	A	1300	1305	anti-parallel
Strand 4	A	1138	1140	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1300	1303	first strand
Strand 2	B	1314	1317	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	141	143	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	238	first strand
Strand 2	C	203	210	parallel
Strand 3	C	180	184	parallel
Strand 4	C	266	270	parallel
Strand 5	C	305	308	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	21	24	parallel
Strand 3	D	141	144	parallel
Strand 4	D	305	308	parallel
Strand 5	D	266	268	parallel
Strand 6	D	180	183	parallel
Strand 7	D	203	210	parallel
Strand 8	D	233	238	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	126	first strand
Strand 2	G	156	157	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	140	141	first strand
Strand 2	H	225	229	anti-parallel
Strand 3	H	270	273	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	42	43	first strand
Strand 2	P	85	86	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	77	78	first strand
Strand 2	P	50	51	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	100	102	first strand
Strand 2	V	96	98	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	83	84	first strand
Strand 2	R	80	81	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	118	119	first strand
Strand 2	R	45	46	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	96	98	first strand
Strand 2	S	100	102	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	42	43	first strand
Strand 2	T	85	86	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	77	78	first strand
Strand 2	T	50	51	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	83	84	first strand
Strand 2	V	80	81	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	118	119	first strand
Strand 2	V	45	46	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V2V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V2V