Analysis of interatomic Contacts of Structural Units in PDB entry:
9V2W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V2W entry

There are 26 chains in PDB entry 9V2W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 225	ASP 1320
B	ARG 11	PRO 117
C	ASP 9	ALA 386
D	THR 29	THR 119
E	GLU 177	ASP 295
F	LYS 14	LEU 324
G	THR 73	GLN 191
H	LYS 37	GLU 133
I	LEU 11	THR 115
J	ILE 169	LEU 384
K	THR 243	LEU 491
L	ASP 24	PHE 100
M	ARG 11	PRO 117
N	LYS 28	SER 120
O	ARG 11	PRO 117
P	LYS 28	SER 120
Q	LYS 37	ARG 134
R	LEU 22	PHE 100
S	ARG 11	PRO 117
T	THR 29	THR 119
U	LYS 37	GLU 133
V	LEU 22	PHE 100
W	LYS 37	ARG 134
Z	ARG 23	PHE 100
X	G 1	A 329
Y	T 1	C 329

There are144 helices in PDB entry 9V2W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	240	251	Right-handed alpha
Helix 2	AA2	A	258	268	Right-handed alpha
Helix 3	AA3	A	274	283	Right-handed alpha
Helix 4	AA4	A	303	310	Right-handed 310
Helix 5	AA5	A	321	331	Right-handed alpha
Helix 6	AA6	A	406	415	Right-handed alpha
Helix 7	AA7	A	417	422	Right-handed alpha
Helix 8	AA8	A	426	440	Right-handed alpha
Helix 9	AA9	A	450	455	Right-handed alpha
Helix 10	AB1	A	456	458	Right-handed 310
Helix 11	AB2	A	460	469	Right-handed alpha
Helix 12	AB3	A	663	673	Right-handed alpha
Helix 13	AB4	A	678	694	Right-handed alpha
Helix 14	AB5	A	698	705	Right-handed alpha
Helix 15	AB6	A	706	711	Right-handed alpha
Helix 16	AB7	A	801	840	Right-handed alpha
Helix 17	AB8	A	842	848	Right-handed alpha
Helix 18	AB9	A	862	871	Right-handed alpha
Helix 19	AC1	A	872	886	Right-handed alpha
Helix 20	AC2	A	886	922	Right-handed alpha
Helix 21	AC3	A	923	929	Right-handed alpha
Helix 22	AC4	A	929	939	Right-handed alpha
Helix 23	AC5	A	940	949	Right-handed 310
Helix 24	AC6	A	983	999	Right-handed alpha
Helix 25	AC7	A	1003	1022	Right-handed alpha
Helix 26	AC8	A	1075	1080	Right-handed alpha
Helix 27	AC9	A	1143	1164	Right-handed alpha
Helix 28	AD1	A	1164	1174	Right-handed alpha
Helix 29	AD2	A	1178	1183	Right-handed alpha
Helix 30	AD3	A	1189	1194	Right-handed alpha
Helix 31	AD4	A	1202	1216	Right-handed alpha
Helix 32	AD5	A	1220	1232	Right-handed alpha
Helix 33	AD6	A	1241	1259	Right-handed alpha
Helix 34	AD7	A	1259	1274	Right-handed alpha
Helix 35	AD8	A	1279	1294	Right-handed alpha
Helix 36	AD9	B	16	21	Right-handed alpha
Helix 37	AE1	B	26	36	Right-handed alpha
Helix 38	AE2	B	45	73	Right-handed alpha
Helix 39	AE3	B	79	90	Right-handed alpha
Helix 40	AE4	B	90	97	Right-handed alpha
Helix 41	AE5	C	42	55	Right-handed alpha
Helix 42	AE6	C	56	61	Right-handed 310
Helix 43	AE7	C	70	75	Right-handed alpha
Helix 44	AE8	C	79	87	Right-handed alpha
Helix 45	AE9	C	100	105	Right-handed alpha
Helix 46	AF1	C	115	136	Right-handed alpha
Helix 47	AF2	C	164	175	Right-handed alpha
Helix 48	AF3	C	190	195	Right-handed alpha
Helix 49	AF4	C	196	198	Right-handed 310
Helix 50	AF5	C	243	262	Right-handed alpha
Helix 51	AF6	C	287	292	Right-handed alpha
Helix 52	AF7	C	292	300	Right-handed alpha
Helix 53	AF8	C	314	330	Right-handed alpha
Helix 54	AF9	C	365	381	Right-handed alpha
Helix 55	AG1	C	382	384	Right-handed 310
Helix 56	AG2	D	34	46	Right-handed alpha
Helix 57	AG3	D	52	81	Right-handed alpha
Helix 58	AG4	D	87	98	Right-handed alpha
Helix 59	AG5	D	100	119	Right-handed alpha
Helix 60	AG6	E	181	191	Right-handed alpha
Helix 61	AG7	E	195	210	Right-handed alpha
Helix 62	AG8	E	222	292	Right-handed alpha
Helix 63	AG9	E	293	295	Right-handed 310
Helix 64	AH1	F	15	35	Right-handed alpha
Helix 65	AH2	F	35	54	Right-handed alpha
Helix 66	AH3	F	64	132	Right-handed alpha
Helix 67	AH4	F	300	314	Right-handed alpha
Helix 68	AH5	G	74	88	Right-handed alpha
Helix 69	AH6	G	109	119	Right-handed alpha
Helix 70	AH7	G	128	133	Right-handed alpha
Helix 71	AH8	G	134	136	Right-handed 310
Helix 72	AH9	G	137	141	Right-handed 310
Helix 73	AI1	G	142	151	Right-handed alpha
Helix 74	AI2	G	158	173	Right-handed alpha
Helix 75	AI3	G	183	188	Right-handed alpha
Helix 76	AI4	H	44	57	Right-handed alpha
Helix 77	AI5	H	63	76	Right-handed alpha
Helix 78	AI6	H	85	114	Right-handed alpha
Helix 79	AI7	H	120	132	Right-handed alpha
Helix 80	AI8	I	14	36	Right-handed alpha
Helix 81	AI9	I	42	55	Right-handed alpha
Helix 82	AJ1	I	62	78	Right-handed alpha
Helix 83	AJ2	I	79	112	Right-handed alpha
Helix 84	AJ3	J	173	178	Right-handed alpha
Helix 85	AJ4	J	186	217	Right-handed alpha
Helix 86	AJ5	J	227	232	Right-handed alpha
Helix 87	AJ6	J	286	290	Right-handed 310
Helix 88	AJ7	J	337	384	Right-handed alpha
Helix 89	AJ8	K	247	252	Right-handed alpha
Helix 90	AJ9	K	463	483	Right-handed alpha
Helix 91	AK1	L	25	29	Right-handed 310
Helix 92	AK2	L	30	41	Right-handed alpha
Helix 93	AK3	L	49	76	Right-handed alpha
Helix 94	AK4	L	82	94	Right-handed alpha
Helix 95	AK5	M	16	21	Right-handed alpha
Helix 96	AK6	M	26	36	Right-handed alpha
Helix 97	AK7	M	45	73	Right-handed alpha
Helix 98	AK8	M	79	90	Right-handed alpha
Helix 99	AK9	M	90	97	Right-handed alpha
Helix 100	AL1	N	34	46	Right-handed alpha
Helix 101	AL2	N	52	81	Right-handed alpha
Helix 102	AL3	N	87	98	Right-handed alpha
Helix 103	AL4	N	100	117	Right-handed alpha
Helix 104	AL5	O	16	21	Right-handed alpha
Helix 105	AL6	O	26	36	Right-handed alpha
Helix 106	AL7	O	45	73	Right-handed alpha
Helix 107	AL8	O	79	90	Right-handed alpha
Helix 108	AL9	O	90	97	Right-handed alpha
Helix 109	AM1	P	34	46	Right-handed alpha
Helix 110	AM2	P	52	81	Right-handed alpha
Helix 111	AM3	P	87	98	Right-handed alpha
Helix 112	AM4	P	100	119	Right-handed alpha
Helix 113	AM5	Q	44	55	Right-handed alpha
Helix 114	AM6	Q	63	76	Right-handed alpha
Helix 115	AM7	Q	85	114	Right-handed alpha
Helix 116	AM8	Q	120	131	Right-handed alpha
Helix 117	AM9	R	25	29	Right-handed 310
Helix 118	AN1	R	30	41	Right-handed alpha
Helix 119	AN2	R	50	76	Right-handed alpha
Helix 120	AN3	R	82	92	Right-handed alpha
Helix 121	AN4	S	16	21	Right-handed alpha
Helix 122	AN5	S	26	36	Right-handed alpha
Helix 123	AN6	S	45	73	Right-handed alpha
Helix 124	AN7	S	79	90	Right-handed alpha
Helix 125	AN8	S	90	97	Right-handed alpha
Helix 126	AN9	T	34	46	Right-handed alpha
Helix 127	AO1	T	52	81	Right-handed alpha
Helix 128	AO2	T	87	99	Right-handed alpha
Helix 129	AO3	T	100	119	Right-handed alpha
Helix 130	AO4	U	44	56	Right-handed alpha
Helix 131	AO5	U	63	76	Right-handed alpha
Helix 132	AO6	U	85	114	Right-handed alpha
Helix 133	AO7	U	120	131	Right-handed alpha
Helix 134	AO8	V	25	29	Right-handed 310
Helix 135	AO9	V	30	41	Right-handed alpha
Helix 136	AP1	V	50	76	Right-handed alpha
Helix 137	AP2	V	82	92	Right-handed alpha
Helix 138	AP3	W	44	57	Right-handed alpha
Helix 139	AP4	W	63	76	Right-handed alpha
Helix 140	AP5	W	85	114	Right-handed alpha
Helix 141	AP6	W	120	131	Right-handed alpha
Helix 142	AP7	Z	30	41	Right-handed alpha
Helix 143	AP8	Z	49	76	Right-handed alpha
Helix 144	AP9	Z	82	93	Right-handed alpha

There are 22 sheets in PDB entry 9V2W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	755	757	first strand
Strand 2	A	782	784	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	976	977	first strand
Strand 2	A	1312	1317	anti-parallel
Strand 3	A	1300	1306	anti-parallel
Strand 4	A	1135	1140	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	Z	96	97	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	21	24	parallel
Strand 3	C	141	143	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	207	first strand
Strand 2	C	180	184	parallel
Strand 3	C	266	270	parallel
Strand 4	C	305	308	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	83	84	first strand
Strand 2	L	80	81	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	96	98	first strand
Strand 2	M	100	102	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	42	43	first strand
Strand 2	N	85	86	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	77	78	first strand
Strand 2	N	50	51	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	42	43	first strand
Strand 2	P	85	86	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	77	78	first strand
Strand 2	P	50	51	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	100	102	first strand
Strand 2	V	96	98	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	83	84	first strand
Strand 2	R	80	81	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	118	119	first strand
Strand 2	R	45	46	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	96	98	first strand
Strand 2	S	100	102	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	42	43	first strand
Strand 2	T	85	86	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	77	78	first strand
Strand 2	T	50	51	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	83	84	first strand
Strand 2	V	80	81	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	118	119	first strand
Strand 2	V	45	46	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	83	84	first strand
Strand 2	Z	80	81	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V2W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V2W