Analysis of interatomic Contacts of Structural Units in PDB entry:
9V33

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V33 entry

There are 11 chains in PDB entry 9V33 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	ARG 134
B	VAL 21	GLY 102
C	ARG 11	ILE 111
D	ARG 26	LYS 122
E	LYS 37	ARG 134
F	ARG 23	GLY 102
G	LYS 13	LYS 118
H	LYS 28	LYS 122
I	G -61	T 72
J	A -72	C 61
K	TRP 46	TRP 46

There are 58 helices in PDB entry 9V33. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	79	Right-handed alpha
Helix 3	AA3	A	85	113	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	25	29	Right-handed 310
Helix 6	AA6	B	30	41	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	93	Right-handed alpha
Helix 9	AA9	C	16	21	Right-handed alpha
Helix 10	AB1	C	26	37	Right-handed alpha
Helix 11	AB2	C	45	73	Right-handed alpha
Helix 12	AB3	C	79	90	Right-handed alpha
Helix 13	AB4	C	90	97	Right-handed alpha
Helix 14	AB5	D	34	46	Right-handed alpha
Helix 15	AB6	D	52	81	Right-handed alpha
Helix 16	AB7	D	87	99	Right-handed alpha
Helix 17	AB8	D	100	121	Right-handed alpha
Helix 18	AB9	E	44	57	Right-handed alpha
Helix 19	AC1	E	63	77	Right-handed alpha
Helix 20	AC2	E	85	114	Right-handed alpha
Helix 21	AC3	E	120	131	Right-handed alpha
Helix 22	AC4	F	23	29	Right-handed 310
Helix 23	AC5	F	30	41	Right-handed alpha
Helix 24	AC6	F	49	76	Right-handed alpha
Helix 25	AC7	F	82	94	Right-handed alpha
Helix 26	AC8	G	16	22	Right-handed alpha
Helix 27	AC9	G	26	37	Right-handed alpha
Helix 28	AD1	G	46	72	Right-handed alpha
Helix 29	AD2	G	79	90	Right-handed alpha
Helix 30	AD3	G	91	97	Right-handed alpha
Helix 31	AD4	H	34	46	Right-handed alpha
Helix 32	AD5	H	52	81	Right-handed alpha
Helix 33	AD6	H	87	99	Right-handed alpha
Helix 34	AD7	H	100	122	Right-handed alpha
Helix 35	AD8	K	52	62	Right-handed alpha
Helix 36	AD9	K	130	141	Right-handed alpha
Helix 37	AE1	K	144	148	Right-handed 310
Helix 38	AE2	K	151	161	Right-handed alpha
Helix 39	AE3	K	165	175	Right-handed alpha
Helix 40	AE4	K	176	185	Right-handed alpha
Helix 41	AE5	K	277	294	Right-handed alpha
Helix 42	AE6	K	338	373	Right-handed alpha
Helix 43	AE7	K	376	384	Right-handed alpha
Helix 44	AE8	L	241	248	Right-handed alpha
Helix 45	AE9	M	22	35	Right-handed alpha
Helix 46	AF1	M	37	41	Right-handed 310
Helix 47	AF2	N	53	63	Right-handed alpha
Helix 48	AF3	N	130	142	Right-handed alpha
Helix 49	AF4	N	151	161	Right-handed alpha
Helix 50	AF5	N	165	175	Right-handed alpha
Helix 51	AF6	N	176	185	Right-handed alpha
Helix 52	AF7	N	247	254	Right-handed alpha
Helix 53	AF8	N	277	294	Right-handed alpha
Helix 54	AF9	N	339	374	Right-handed alpha
Helix 55	AG1	N	376	390	Right-handed alpha
Helix 56	AG2	O	229	235	Right-handed alpha
Helix 57	AG3	O	237	247	Right-handed alpha
Helix 58	AG4	O	283	299	Right-handed alpha

There are 13 sheets in PDB entry 9V33. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	69	72	first strand
Strand 2	K	270	275	anti-parallel
Strand 3	K	85	89	anti-parallel
Strand 4	K	214	219	anti-parallel
Strand 5	K	224	227	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	12	15	first strand
Strand 2	M	3	6	anti-parallel
Strand 3	M	66	70	parallel
Strand 4	M	42	45	anti-parallel
Strand 5	M	48	49	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	69	72	first strand
Strand 2	N	272	275	anti-parallel
Strand 3	N	85	89	anti-parallel
Strand 4	N	214	217	anti-parallel
Strand 5	N	226	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V33

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V33