Analysis of interatomic Contacts of Structural Units in PDB entry:
9V37

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V37 entry

There are 4 chains in PDB entry 9V37 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLY 4	GLU 397
C	GLY 4	GLU 397
A	GLY 4	GLU 397
B	GLY 4	GLU 397

There are 66 helices in PDB entry 9V37. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	29	46	Right-handed alpha
Helix 2	AA2	D	48	52	Right-handed 310
Helix 3	AA3	D	68	77	Right-handed alpha
Helix 4	AA4	D	90	92	Right-handed 310
Helix 5	AA5	D	93	108	Right-handed alpha
Helix 6	AA6	D	145	151	Right-handed alpha
Helix 7	AA7	D	159	172	Right-handed alpha
Helix 8	AA8	D	174	196	Right-handed alpha
Helix 9	AA9	D	227	232	Right-handed alpha
Helix 10	AB1	D	266	273	Right-handed alpha
Helix 11	AB2	D	289	295	Right-handed 310
Helix 12	AB3	D	296	309	Right-handed alpha
Helix 13	AB4	D	324	336	Right-handed alpha
Helix 14	AB5	D	347	352	Right-handed alpha
Helix 15	AB6	D	354	373	Right-handed alpha
Helix 16	AB7	C	29	45	Right-handed alpha
Helix 17	AB8	C	48	52	Right-handed 310
Helix 18	AB9	C	68	77	Right-handed alpha
Helix 19	AC1	C	90	92	Right-handed 310
Helix 20	AC2	C	93	108	Right-handed alpha
Helix 21	AC3	C	145	150	Right-handed alpha
Helix 22	AC4	C	159	171	Right-handed alpha
Helix 23	AC5	C	174	195	Right-handed alpha
Helix 24	AC6	C	227	232	Right-handed alpha
Helix 25	AC7	C	266	273	Right-handed alpha
Helix 26	AC8	C	289	295	Right-handed 310
Helix 27	AC9	C	296	309	Right-handed alpha
Helix 28	AD1	C	311	315	Right-handed 310
Helix 29	AD2	C	324	336	Right-handed alpha
Helix 30	AD3	C	347	352	Right-handed alpha
Helix 31	AD4	C	354	374	Right-handed alpha
Helix 32	AD5	A	29	45	Right-handed alpha
Helix 33	AD6	A	48	52	Right-handed 310
Helix 34	AD7	A	68	77	Right-handed alpha
Helix 35	AD8	A	90	92	Right-handed 310
Helix 36	AD9	A	93	108	Right-handed alpha
Helix 37	AE1	A	145	150	Right-handed alpha
Helix 38	AE2	A	159	171	Right-handed alpha
Helix 39	AE3	A	174	195	Right-handed alpha
Helix 40	AE4	A	227	232	Right-handed alpha
Helix 41	AE5	A	247	251	Right-handed 310
Helix 42	AE6	A	266	273	Right-handed alpha
Helix 43	AE7	A	289	295	Right-handed 310
Helix 44	AE8	A	296	308	Right-handed alpha
Helix 45	AE9	A	311	315	Right-handed 310
Helix 46	AF1	A	324	336	Right-handed alpha
Helix 47	AF2	A	338	342	Right-handed 310
Helix 48	AF3	A	347	352	Right-handed alpha
Helix 49	AF4	A	354	373	Right-handed alpha
Helix 50	AF5	B	29	46	Right-handed alpha
Helix 51	AF6	B	48	52	Right-handed 310
Helix 52	AF7	B	68	77	Right-handed alpha
Helix 53	AF8	B	90	92	Right-handed 310
Helix 54	AF9	B	93	108	Right-handed alpha
Helix 55	AG1	B	123	125	Right-handed 310
Helix 56	AG2	B	145	151	Right-handed alpha
Helix 57	AG3	B	159	172	Right-handed alpha
Helix 58	AG4	B	174	195	Right-handed alpha
Helix 59	AG5	B	227	232	Right-handed alpha
Helix 60	AG6	B	266	272	Right-handed alpha
Helix 61	AG7	B	289	295	Right-handed 310
Helix 62	AG8	B	296	309	Right-handed alpha
Helix 63	AG9	B	311	315	Right-handed 310
Helix 64	AH1	B	324	336	Right-handed alpha
Helix 65	AH2	B	347	352	Right-handed alpha
Helix 66	AH3	B	354	373	Right-handed alpha

There are 9 sheets in PDB entry 9V37. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	20	first strand
Strand 2	D	255	265	anti-parallel
Strand 3	D	113	121	anti-parallel
Strand 4	D	54	58	parallel
Strand 5	D	85	89	parallel
Strand 6	C	85	89	anti-parallel
Strand 7	C	54	58	parallel
Strand 8	C	113	121	parallel
Strand 9	C	255	265	anti-parallel
Strand 10	C	19	20	anti-parallel

Back to list of sheets
Back to top of page

There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	320	first strand
Strand 2	D	377	384	parallel
Strand 3	D	388	395	anti-parallel
Strand 4	D	278	287	anti-parallel
Strand 5	D	8	15	anti-parallel
Strand 6	D	255	265	anti-parallel
Strand 7	D	113	121	anti-parallel
Strand 8	D	54	58	parallel
Strand 9	D	85	89	parallel
Strand 10	C	85	89	anti-parallel
Strand 11	C	54	58	parallel
Strand 12	C	113	121	parallel
Strand 13	C	255	265	anti-parallel
Strand 14	C	8	15	anti-parallel
Strand 15	C	278	287	anti-parallel
Strand 16	C	388	395	anti-parallel
Strand 17	C	377	384	anti-parallel
Strand 18	C	317	320	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	129	first strand
Strand 2	D	140	144	anti-parallel
Strand 3	B	140	144	anti-parallel
Strand 4	B	127	129	anti-parallel
Strand 5	A	127	129	anti-parallel
Strand 6	A	140	144	anti-parallel
Strand 7	C	140	144	anti-parallel
Strand 8	C	127	129	anti-parallel
Strand 9	D	127	129	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	208	first strand
Strand 2	D	213	216	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	209	first strand
Strand 2	C	212	216	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	255	265	anti-parallel
Strand 3	A	113	121	anti-parallel
Strand 4	A	54	58	parallel
Strand 5	A	85	89	parallel
Strand 6	B	85	89	anti-parallel
Strand 7	B	54	58	parallel
Strand 8	B	113	121	parallel
Strand 9	B	255	265	anti-parallel
Strand 10	B	19	20	anti-parallel

Back to list of sheets
Back to top of page

There are 18 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	320	first strand
Strand 2	A	377	384	parallel
Strand 3	A	388	395	anti-parallel
Strand 4	A	278	287	anti-parallel
Strand 5	A	8	15	anti-parallel
Strand 6	A	255	265	anti-parallel
Strand 7	A	113	121	anti-parallel
Strand 8	A	54	58	parallel
Strand 9	A	85	89	parallel
Strand 10	B	85	89	anti-parallel
Strand 11	B	54	58	parallel
Strand 12	B	113	121	parallel
Strand 13	B	255	265	anti-parallel
Strand 14	B	8	15	anti-parallel
Strand 15	B	278	287	anti-parallel
Strand 16	B	388	395	anti-parallel
Strand 17	B	377	384	anti-parallel
Strand 18	B	317	320	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	209	first strand
Strand 2	A	212	216	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	209	first strand
Strand 2	B	212	216	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V37

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V37