Analysis of interatomic Contacts of Structural Units in PDB entry:
9V38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9V38 entry

There are 3 chains in PDB entry 9V38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 ALA 37PHE 294
C
 PRO 5LEU 8
C
 ARG 10ARG 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9V38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
R
37 64Right-handed alpha
Helix 2
AA2
R
65 66Right-handed 310
Helix 3
AA3
R
67 68Right-handed 310
Helix 4
AA4
R
69 85Right-handed alpha
Helix 5
AA5
R
86 96Right-handed alpha
Helix 6
AA6
R
102 137Right-handed alpha
Helix 7
AA7
R
143 172Right-handed alpha
Helix 8
AA8
R
195 209Right-handed alpha
Helix 9
AA9
R
209 225Right-handed alpha
Helix 10
AB1
R
232 259Right-handed alpha
Helix 11
AB2
R
263 294Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9V38.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
174 178first strand
Strand 2
R
183 188anti-parallel
Strand 3
C
6 7anti-parallel
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