Analysis of interatomic Contacts of Structural Units in PDB entry:
9V3F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V3F entry

There are 6 chains in PDB entry 9V3F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 27	PRO 447
E	ALA 1	LYS 111
B	ILE 27	PRO 447
F	ALA 1	LYS 111
C	ILE 27	PRO 447
G	ALA 1	LYS 111

There are 57 helices in PDB entry 9V3F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	37	Right-handed alpha
Helix 2	AA2	A	65	69	Right-handed 310
Helix 3	AA3	A	74	100	Right-handed alpha
Helix 4	AA4	A	117	121	Right-handed alpha
Helix 5	AA5	A	125	146	Right-handed alpha
Helix 6	AA6	A	147	153	Right-handed alpha
Helix 7	AA7	A	175	183	Right-handed alpha
Helix 8	AA8	A	184	187	Right-handed 310
Helix 9	AA9	A	191	215	Right-handed alpha
Helix 10	AB1	A	227	232	Right-handed alpha
Helix 11	AB2	A	233	236	Right-handed 310
Helix 12	AB3	A	238	247	Right-handed alpha
Helix 13	AB4	A	252	258	Right-handed alpha
Helix 14	AB5	A	328	331	Right-handed 310
Helix 15	AB6	A	349	358	Right-handed alpha
Helix 16	AB7	A	359	363	Right-handed 310
Helix 17	AB8	E	10	15	Right-handed alpha
Helix 18	AB9	E	33	37	Right-handed 310
Helix 19	AC1	B	29	37	Right-handed alpha
Helix 20	AC2	B	65	69	Right-handed 310
Helix 21	AC3	B	74	100	Right-handed alpha
Helix 22	AC4	B	117	121	Right-handed alpha
Helix 23	AC5	B	125	146	Right-handed alpha
Helix 24	AC6	B	147	153	Right-handed alpha
Helix 25	AC7	B	175	183	Right-handed alpha
Helix 26	AC8	B	184	187	Right-handed 310
Helix 27	AC9	B	191	215	Right-handed alpha
Helix 28	AD1	B	227	232	Right-handed alpha
Helix 29	AD2	B	233	236	Right-handed 310
Helix 30	AD3	B	238	247	Right-handed alpha
Helix 31	AD4	B	252	258	Right-handed alpha
Helix 32	AD5	B	328	331	Right-handed 310
Helix 33	AD6	B	349	358	Right-handed alpha
Helix 34	AD7	B	359	363	Right-handed 310
Helix 35	AD8	F	10	15	Right-handed alpha
Helix 36	AD9	F	33	37	Right-handed 310
Helix 37	AE1	F	73	79	Right-handed alpha
Helix 38	AE2	F	93	98	Right-handed 310
Helix 39	AE3	C	29	37	Right-handed alpha
Helix 40	AE4	C	65	69	Right-handed 310
Helix 41	AE5	C	74	100	Right-handed alpha
Helix 42	AE6	C	117	121	Right-handed alpha
Helix 43	AE7	C	125	146	Right-handed alpha
Helix 44	AE8	C	147	153	Right-handed alpha
Helix 45	AE9	C	175	183	Right-handed alpha
Helix 46	AF1	C	184	187	Right-handed 310
Helix 47	AF2	C	191	215	Right-handed alpha
Helix 48	AF3	C	227	232	Right-handed alpha
Helix 49	AF4	C	233	236	Right-handed 310
Helix 50	AF5	C	238	247	Right-handed alpha
Helix 51	AF6	C	252	258	Right-handed alpha
Helix 52	AF7	C	328	331	Right-handed 310
Helix 53	AF8	C	349	358	Right-handed alpha
Helix 54	AF9	C	359	363	Right-handed 310
Helix 55	AG1	G	10	16	Right-handed alpha
Helix 56	AG2	G	33	35	Right-handed 310
Helix 57	AG3	G	95	99	Right-handed 310

There are 21 sheets in PDB entry 9V3F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	162	first strand
Strand 2	A	168	173	anti-parallel
Strand 3	A	38	60	parallel
Strand 4	A	337	340	parallel
Strand 5	A	332	333	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	270	first strand
Strand 2	A	275	287	anti-parallel
Strand 3	A	38	60	anti-parallel
Strand 4	A	292	298	anti-parallel
Strand 5	A	315	319	anti-parallel
Strand 6	A	322	326	anti-parallel
Strand 7	A	345	346	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	113	116	anti-parallel
Strand 3	C	425	428	parallel
Strand 4	C	419	422	anti-parallel
Strand 5	C	393	394	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	C	376	379	anti-parallel
Strand 3	C	382	385	anti-parallel
Strand 4	C	410	412	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	306	310	anti-parallel
Strand 3	A	365	367	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	376	379	anti-parallel
Strand 4	B	123	124	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	394	first strand
Strand 2	A	419	422	anti-parallel
Strand 3	A	425	428	anti-parallel
Strand 4	B	113	116	parallel
Strand 5	B	101	103	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	22	28	anti-parallel
Strand 3	E	67	71	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	42	first strand
Strand 2	E	84	88	anti-parallel
Strand 3	E	103	104	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	162	first strand
Strand 2	B	168	173	anti-parallel
Strand 3	B	38	60	parallel
Strand 4	B	337	340	parallel
Strand 5	B	332	333	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	270	first strand
Strand 2	B	275	287	anti-parallel
Strand 3	B	38	60	anti-parallel
Strand 4	B	292	298	anti-parallel
Strand 5	B	315	319	anti-parallel
Strand 6	B	322	326	anti-parallel
Strand 7	B	345	346	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	303	first strand
Strand 2	B	306	310	anti-parallel
Strand 3	B	365	367	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	376	379	anti-parallel
Strand 4	C	123	124	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	394	first strand
Strand 2	B	419	422	anti-parallel
Strand 3	B	425	428	anti-parallel
Strand 4	C	113	116	parallel
Strand 5	C	101	103	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	22	26	anti-parallel
Strand 3	F	67	71	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	42	first strand
Strand 2	F	84	88	anti-parallel
Strand 3	F	103	105	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	162	first strand
Strand 2	C	168	173	anti-parallel
Strand 3	C	38	60	parallel
Strand 4	C	337	340	parallel
Strand 5	C	332	333	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	270	first strand
Strand 2	C	275	287	anti-parallel
Strand 3	C	38	60	anti-parallel
Strand 4	C	292	298	anti-parallel
Strand 5	C	315	318	anti-parallel
Strand 6	C	323	326	anti-parallel
Strand 7	C	345	346	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	303	first strand
Strand 2	C	306	310	anti-parallel
Strand 3	C	365	367	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	22	28	anti-parallel
Strand 3	G	68	71	anti-parallel
Strand 4	G	51	53	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	42	first strand
Strand 2	G	84	89	anti-parallel
Strand 3	G	103	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V3F

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V3F