Analysis of interatomic Contacts of Structural Units in PDB entry:
9V44

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V44 entry

There are 4 chains in PDB entry 9V44 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 716
B	MET 1	GLN 756
C	MET 1	GLY 247
D	ASN 21	VAL 463

There are 92 helices in PDB entry 9V44. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	8	Right-handed 310
Helix 2	AA2	A	11	24	Right-handed alpha
Helix 3	AA3	A	33	50	Right-handed alpha
Helix 4	AA4	A	83	96	Right-handed alpha
Helix 5	AA5	A	129	138	Right-handed alpha
Helix 6	AA6	A	156	160	Right-handed 310
Helix 7	AA7	A	165	186	Right-handed alpha
Helix 8	AA8	A	209	218	Right-handed alpha
Helix 9	AA9	A	225	235	Right-handed alpha
Helix 10	AB1	A	240	246	Right-handed alpha
Helix 11	AB2	A	302	314	Right-handed alpha
Helix 12	AB3	A	331	350	Right-handed alpha
Helix 13	AB4	A	363	371	Right-handed alpha
Helix 14	AB5	A	405	414	Right-handed alpha
Helix 15	AB6	A	433	451	Right-handed alpha
Helix 16	AB7	A	453	476	Right-handed alpha
Helix 17	AB8	A	529	533	Right-handed 310
Helix 18	AB9	A	571	579	Right-handed alpha
Helix 19	AC1	A	580	582	Right-handed 310
Helix 20	AC2	A	583	600	Right-handed alpha
Helix 21	AC3	A	607	614	Right-handed alpha
Helix 22	AC4	A	632	650	Right-handed alpha
Helix 23	AC5	A	652	674	Right-handed alpha
Helix 24	AC6	A	683	693	Right-handed alpha
Helix 25	AC7	A	697	715	Right-handed alpha
Helix 26	AC8	B	5	11	Right-handed 310
Helix 27	AC9	B	13	21	Right-handed 310
Helix 28	AD1	B	35	49	Right-handed alpha
Helix 29	AD2	B	85	99	Right-handed alpha
Helix 30	AD3	B	101	117	Right-handed alpha
Helix 31	AD4	B	118	124	Right-handed 310
Helix 32	AD5	B	139	152	Right-handed alpha
Helix 33	AD6	B	157	161	Right-handed 310
Helix 34	AD7	B	162	173	Right-handed alpha
Helix 35	AD8	B	214	222	Right-handed alpha
Helix 36	AD9	B	248	264	Right-handed alpha
Helix 37	AE1	B	274	291	Right-handed alpha
Helix 38	AE2	B	314	326	Right-handed alpha
Helix 39	AE3	B	330	338	Right-handed alpha
Helix 40	AE4	B	339	345	Right-handed alpha
Helix 41	AE5	B	369	373	Right-handed 310
Helix 42	AE6	B	382	393	Right-handed alpha
Helix 43	AE7	B	412	426	Right-handed alpha
Helix 44	AE8	B	428	433	Right-handed alpha
Helix 45	AE9	B	456	471	Right-handed alpha
Helix 46	AF1	B	504	509	Right-handed alpha
Helix 47	AF2	B	510	512	Right-handed 310
Helix 48	AF3	B	520	536	Right-handed alpha
Helix 49	AF4	B	540	559	Right-handed alpha
Helix 50	AF5	B	572	582	Right-handed alpha
Helix 51	AF6	B	590	594	Right-handed 310
Helix 52	AF7	B	601	606	Right-handed 310
Helix 53	AF8	B	612	616	Right-handed 310
Helix 54	AF9	B	617	625	Right-handed alpha
Helix 55	AG1	B	680	694	Right-handed alpha
Helix 56	AG2	B	694	700	Right-handed alpha
Helix 57	AG3	B	713	721	Right-handed alpha
Helix 58	AG4	B	723	729	Right-handed alpha
Helix 59	AG5	B	737	754	Right-handed alpha
Helix 60	AG6	C	2	11	Right-handed alpha
Helix 61	AG7	C	16	23	Right-handed alpha
Helix 62	AG8	C	27	32	Right-handed alpha
Helix 63	AG9	C	42	51	Right-handed alpha
Helix 64	AH1	C	60	66	Right-handed 310
Helix 65	AH2	C	93	102	Right-handed alpha
Helix 66	AH3	C	110	115	Right-handed alpha
Helix 67	AH4	C	115	126	Right-handed alpha
Helix 68	AH5	C	155	168	Right-handed alpha
Helix 69	AH6	C	169	172	Right-handed 310
Helix 70	AH7	C	179	193	Right-handed alpha
Helix 71	AH8	C	199	212	Right-handed alpha
Helix 72	AH9	C	225	230	Right-handed alpha
Helix 73	AI1	D	22	48	Right-handed alpha
Helix 74	AI2	D	50	55	Right-handed alpha
Helix 75	AI3	D	56	71	Right-handed alpha
Helix 76	AI4	D	72	82	Right-handed alpha
Helix 77	AI5	D	112	124	Right-handed alpha
Helix 78	AI6	D	129	148	Right-handed alpha
Helix 79	AI7	D	150	157	Right-handed alpha
Helix 80	AI8	D	167	172	Right-handed 310
Helix 81	AI9	D	178	184	Right-handed alpha
Helix 82	AJ1	D	185	203	Right-handed alpha
Helix 83	AJ2	D	211	230	Right-handed alpha
Helix 84	AJ3	D	232	245	Right-handed alpha
Helix 85	AJ4	D	249	265	Right-handed alpha
Helix 86	AJ5	D	277	288	Right-handed alpha
Helix 87	AJ6	D	300	309	Right-handed alpha
Helix 88	AJ7	D	321	333	Right-handed alpha
Helix 89	AJ8	D	340	348	Right-handed alpha
Helix 90	AJ9	D	354	358	Right-handed 310
Helix 91	AK1	D	421	427	Right-handed alpha
Helix 92	AK2	D	441	450	Right-handed alpha

There are 18 sheets in PDB entry 9V44. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	61	62	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	109	110	anti-parallel
Strand 3	A	117	119	anti-parallel
Strand 4	A	144	145	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	496	506	anti-parallel
Strand 3	A	518	526	anti-parallel
Strand 4	A	556	570	anti-parallel
Strand 5	A	541	551	anti-parallel
Strand 6	A	321	324	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	496	506	anti-parallel
Strand 3	A	481	491	anti-parallel
Strand 4	A	420	421	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	378	first strand
Strand 2	B	364	368	parallel
Strand 3	B	355	359	anti-parallel
Strand 4	A	390	392	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	631	first strand
Strand 2	A	619	624	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	680	first strand
Strand 2	B	483	486	anti-parallel
Strand 3	B	299	304	anti-parallel
Strand 4	B	446	452	anti-parallel
Strand 5	B	437	443	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	181	first strand
Strand 2	B	210	213	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	349	parallel
Strand 4	B	400	402	anti-parallel
Strand 5	B	396	397	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	496	498	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	645	first strand
Strand 2	B	653	656	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	668	first strand
Strand 2	C	57	59	anti-parallel
Strand 3	C	89	91	anti-parallel
Strand 4	C	78	82	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	133	first strand
Strand 2	C	242	245	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	146	first strand
Strand 2	C	215	220	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	99	first strand
Strand 2	D	104	107	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	316	first strand
Strand 2	D	375	378	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V44

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V44