Analysis of interatomic Contacts of Structural Units in PDB entry:
9V46

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V46 entry

There are 5 chains in PDB entry 9V46 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 716
B	MET 1	ARG 754
C	MET 1	GLY 247
E	C 234	U 242
F	A 1	G 16

There are 71 helices in PDB entry 9V46. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed alpha
Helix 2	AA2	A	10	22	Right-handed alpha
Helix 3	AA3	A	33	49	Right-handed alpha
Helix 4	AA4	A	83	97	Right-handed alpha
Helix 5	AA5	A	127	138	Right-handed alpha
Helix 6	AA6	A	156	160	Right-handed 310
Helix 7	AA7	A	165	178	Right-handed alpha
Helix 8	AA8	A	179	184	Right-handed alpha
Helix 9	AA9	A	208	217	Right-handed alpha
Helix 10	AB1	A	225	235	Right-handed alpha
Helix 11	AB2	A	241	249	Right-handed alpha
Helix 12	AB3	A	302	313	Right-handed alpha
Helix 13	AB4	A	331	348	Right-handed alpha
Helix 14	AB5	A	363	369	Right-handed alpha
Helix 15	AB6	A	405	416	Right-handed alpha
Helix 16	AB7	A	433	452	Right-handed alpha
Helix 17	AB8	A	453	476	Right-handed alpha
Helix 18	AB9	A	529	538	Right-handed 310
Helix 19	AC1	A	572	580	Right-handed alpha
Helix 20	AC2	A	583	604	Right-handed alpha
Helix 21	AC3	A	607	613	Right-handed alpha
Helix 22	AC4	A	632	650	Right-handed alpha
Helix 23	AC5	A	654	674	Right-handed alpha
Helix 24	AC6	A	682	692	Right-handed alpha
Helix 25	AC7	A	697	713	Right-handed alpha
Helix 26	AC8	B	4	11	Right-handed 310
Helix 27	AC9	B	17	22	Right-handed 310
Helix 28	AD1	B	35	50	Right-handed alpha
Helix 29	AD2	B	84	99	Right-handed alpha
Helix 30	AD3	B	101	117	Right-handed alpha
Helix 31	AD4	B	118	124	Right-handed 310
Helix 32	AD5	B	138	153	Right-handed alpha
Helix 33	AD6	B	157	161	Right-handed 310
Helix 34	AD7	B	163	174	Right-handed alpha
Helix 35	AD8	B	214	221	Right-handed alpha
Helix 36	AD9	B	248	264	Right-handed alpha
Helix 37	AE1	B	275	292	Right-handed alpha
Helix 38	AE2	B	308	312	Right-handed 310
Helix 39	AE3	B	314	326	Right-handed alpha
Helix 40	AE4	B	330	346	Right-handed alpha
Helix 41	AE5	B	371	376	Right-handed alpha
Helix 42	AE6	B	382	393	Right-handed alpha
Helix 43	AE7	B	394	396	Right-handed 310
Helix 44	AE8	B	414	426	Right-handed alpha
Helix 45	AE9	B	455	472	Right-handed alpha
Helix 46	AF1	B	519	536	Right-handed alpha
Helix 47	AF2	B	540	560	Right-handed alpha
Helix 48	AF3	B	572	582	Right-handed alpha
Helix 49	AF4	B	585	589	Right-handed 310
Helix 50	AF5	B	590	594	Right-handed 310
Helix 51	AF6	B	607	613	Right-handed alpha
Helix 52	AF7	B	614	616	Right-handed 310
Helix 53	AF8	B	617	626	Right-handed alpha
Helix 54	AF9	B	680	698	Right-handed alpha
Helix 55	AG1	B	699	705	Right-handed 310
Helix 56	AG2	B	715	733	Right-handed alpha
Helix 57	AG3	B	736	753	Right-handed alpha
Helix 58	AG4	C	2	13	Right-handed alpha
Helix 59	AG5	C	13	22	Right-handed alpha
Helix 60	AG6	C	24	32	Right-handed alpha
Helix 61	AG7	C	42	51	Right-handed alpha
Helix 62	AG8	C	62	67	Right-handed alpha
Helix 63	AG9	C	93	100	Right-handed alpha
Helix 64	AH1	C	110	115	Right-handed alpha
Helix 65	AH2	C	115	127	Right-handed alpha
Helix 66	AH3	C	155	168	Right-handed alpha
Helix 67	AH4	C	169	172	Right-handed 310
Helix 68	AH5	C	179	193	Right-handed alpha
Helix 69	AH6	C	199	212	Right-handed alpha
Helix 70	AH7	C	225	230	Right-handed alpha
Helix 71	AH8	C	231	236	Right-handed alpha

There are 16 sheets in PDB entry 9V46. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	73	74	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	144	145	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	679	680	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	496	505	anti-parallel
Strand 3	A	517	526	anti-parallel
Strand 4	A	559	571	anti-parallel
Strand 5	A	541	548	anti-parallel
Strand 6	A	317	322	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	496	505	anti-parallel
Strand 3	A	482	490	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	378	first strand
Strand 2	B	364	365	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	56	first strand
Strand 2	B	65	67	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	182	first strand
Strand 2	B	209	213	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	400	402	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	442	first strand
Strand 2	B	446	452	anti-parallel
Strand 3	B	299	305	anti-parallel
Strand 4	B	483	486	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	492	first strand
Strand 2	B	495	498	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	643	first strand
Strand 2	B	655	656	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	668	first strand
Strand 2	C	57	59	anti-parallel
Strand 3	C	89	91	anti-parallel
Strand 4	C	78	82	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	135	first strand
Strand 2	C	240	242	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	146	first strand
Strand 2	C	215	220	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V46

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V46