Analysis of interatomic Contacts of Structural Units in PDB entry:
9V47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9V47 entry

There are 2 chains in PDB entry 9V47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 21SER 486
C
 A 1001 A 1010
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9V47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
21 48Right-handed alpha
Helix 2
AA2
B
50 55Right-handed alpha
Helix 3
AA3
B
56 70Right-handed alpha
Helix 4
AA4
B
113 124Right-handed alpha
Helix 5
AA5
B
129 148Right-handed alpha
Helix 6
AA6
B
151 157Right-handed alpha
Helix 7
AA7
B
162 166Right-handed 310
Helix 8
AA8
B
179 184Right-handed alpha
Helix 9
AA9
B
185 202Right-handed alpha
Helix 10
AB1
B
212 229Right-handed alpha
Helix 11
AB2
B
232 245Right-handed alpha
Helix 12
AB3
B
249 264Right-handed alpha
Helix 13
AB4
B
277 286Right-handed alpha
Helix 14
AB5
B
290 295Right-handed alpha
Helix 15
AB6
B
301 309Right-handed alpha
Helix 16
AB7
B
321 335Right-handed alpha
Helix 17
AB8
B
340 349Right-handed alpha
Helix 18
AB9
B
354 358Right-handed 310
Helix 19
AC1
B
422 430Right-handed alpha
Helix 20
AC2
B
438 448Right-handed alpha
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There are 4 sheets in PDB entry 9V47. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
111 112anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 100first strand
Strand 2
B
103 107anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 314first strand
Strand 2
B
377 378anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 387first strand
Strand 2
B
463 465anti-parallel
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