Analysis of interatomic Contacts of Structural Units in PDB entry:
9V48

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V48 entry

There are 3 chains in PDB entry 9V48 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ASN 21	ALA 471
E	U 227	U 242
F	A 1	U 24

There are 23 helices in PDB entry 9V48. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	21	48	Right-handed alpha
Helix 2	AA2	D	52	55	Right-handed 310
Helix 3	AA3	D	56	71	Right-handed alpha
Helix 4	AA4	D	72	82	Right-handed alpha
Helix 5	AA5	D	113	124	Right-handed alpha
Helix 6	AA6	D	129	148	Right-handed alpha
Helix 7	AA7	D	150	158	Right-handed alpha
Helix 8	AA8	D	161	167	Right-handed 310
Helix 9	AA9	D	177	183	Right-handed 310
Helix 10	AB1	D	185	201	Right-handed alpha
Helix 11	AB2	D	209	230	Right-handed alpha
Helix 12	AB3	D	232	244	Right-handed alpha
Helix 13	AB4	D	250	264	Right-handed alpha
Helix 14	AB5	D	277	279	Right-handed 310
Helix 15	AB6	D	280	288	Right-handed alpha
Helix 16	AB7	D	300	305	Right-handed alpha
Helix 17	AB8	D	321	335	Right-handed alpha
Helix 18	AB9	D	340	349	Right-handed alpha
Helix 19	AC1	D	421	427	Right-handed alpha
Helix 20	AC2	D	428	431	Right-handed 310
Helix 21	AC3	D	438	438	Right-handed 310
Helix 22	AC4	D	439	451	Right-handed alpha
Helix 23	AC5	D	465	469	Right-handed 310

There are 3 sheets in PDB entry 9V48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	111	112	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	100	first strand
Strand 2	D	103	108	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	316	first strand
Strand 2	D	375	377	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V48

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V48