Analysis of interatomic Contacts of Structural Units in PDB entry:
9V4O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9V4O entry

There is 1 chain in PDB entry 9V4O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 344LYS 1527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9V4O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
350 355Right-handed alpha
Helix 2
AA2
A
356 358Right-handed 310
Helix 3
AA3
A
374 376Right-handed 310
Helix 4
AA4
A
407 411Right-handed 310
Helix 5
AA5
A
494 497Right-handed 310
Helix 6
AA6
A
498 517Right-handed alpha
Helix 7
AA7
A
525 535Right-handed alpha
Helix 8
AA8
A
547 558Right-handed alpha
Helix 9
AA9
A
558 566Right-handed alpha
Helix 10
AB1
A
577 586Right-handed alpha
Helix 11
AB2
A
631 644Right-handed alpha
Helix 12
AB3
A
781 783Right-handed 310
Helix 13
AB4
A
785 789Right-handed 310
Helix 14
AB5
A
822 824Right-handed 310
Helix 15
AB6
A
825 847Right-handed alpha
Helix 16
AB7
A
880 892Right-handed alpha
Helix 17
AB8
A
921 924Right-handed 310
Helix 18
AB9
A
976 980Right-handed 310
Helix 19
AC1
A
981 988Right-handed alpha
Helix 20
AC2
A
1003 1005Right-handed 310
Helix 21
AC3
A
1015 1019Right-handed 310
Helix 22
AC4
A
1103 1112Right-handed alpha
Helix 23
AC5
A
1124 1135Right-handed alpha
Helix 24
AC6
A
1144 1155Right-handed alpha
Helix 25
AC7
A
1165 1174Right-handed alpha
Helix 26
AC8
A
1176 1182Right-handed alpha
Helix 27
AC9
A
1218 1231Right-handed alpha
Helix 28
AD1
A
1242 1248Right-handed 310
Helix 29
AD2
A
1249 1263Right-handed alpha
Helix 30
AD3
A
1274 1277Right-handed 310
Helix 31
AD4
A
1338 1343Right-handed alpha
Helix 32
AD5
A
1365 1373Right-handed alpha
Helix 33
AD6
A
1387 1396Right-handed alpha
Helix 34
AD7
A
1404 1408Right-handed 310
Helix 35
AD8
A
1477 1484Right-handed alpha
Helix 36
AD9
A
1496 1506Right-handed alpha
Helix 37
AE1
A
1509 1524Right-handed alpha
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There are 15 sheets in PDB entry 9V4O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 349first strand
Strand 2
A
592 596anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
455 457parallel
Strand 3
A
424 428anti-parallel
Strand 4
A
397 399anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 431first strand
Strand 2
A
390 393anti-parallel
Strand 3
A
484 487parallel
Strand 4
A
473 479anti-parallel
Strand 5
A
437 438anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 431first strand
Strand 2
A
390 393anti-parallel
Strand 3
A
484 487parallel
Strand 4
A
473 479anti-parallel
Strand 5
A
463 468anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 630first strand
Strand 2
A
1162 1163anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
710 712first strand
Strand 2
A
729 732anti-parallel
Strand 3
A
735 738anti-parallel
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There are 14 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
718 719first strand
Strand 2
A
725 727anti-parallel
Strand 3
A
755 764anti-parallel
Strand 4
A
742 745anti-parallel
Strand 5
A
808 816anti-parallel
Strand 6
A
851 858parallel
Strand 7
A
864 867anti-parallel
Strand 8
A
1265 1272anti-parallel
Strand 9
A
1283 1290anti-parallel
Strand 10
A
1234 1240anti-parallel
Strand 11
A
1191 1194parallel
Strand 12
A
1093 1098parallel
Strand 13
A
1115 1121parallel
Strand 14
A
1139 1141parallel
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There are 14 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
718 719first strand
Strand 2
A
725 727anti-parallel
Strand 3
A
755 764anti-parallel
Strand 4
A
770 779anti-parallel
Strand 5
A
793 804anti-parallel
Strand 6
A
851 858parallel
Strand 7
A
864 867anti-parallel
Strand 8
A
1265 1272anti-parallel
Strand 9
A
1283 1290anti-parallel
Strand 10
A
1234 1240anti-parallel
Strand 11
A
1191 1194parallel
Strand 12
A
1093 1098parallel
Strand 13
A
1115 1121parallel
Strand 14
A
1139 1141parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 906first strand
Strand 2
A
909 911anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
992 995first strand
Strand 2
A
1031 1039parallel
Strand 3
A
1007 1014parallel
Strand 4
A
916 919anti-parallel
Strand 5
A
947 955anti-parallel
Strand 6
A
968 973anti-parallel
Strand 7
A
999 1002anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
992 995first strand
Strand 2
A
1031 1039parallel
Strand 3
A
1044 1047anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1313 1315first strand
Strand 2
A
1319 1321anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1356 1357first strand
Strand 2
A
1378 1379anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1412 1414first strand
Strand 2
A
1420 1422anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1443 1444first strand
Strand 2
A
1466 1468parallel
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