Analysis of interatomic Contacts of Structural Units in PDB entry:
9V4P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9V4P entry

There are 5 chains in PDB entry 9V4P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 T 4 A 10
B
 G 12 C 20
C
 G 1 T 8
C
 G 10 A 17
A
 ALA 624LYS 1527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 9V4P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
631 638Right-handed alpha
Helix 2
AA2
A
781 783Right-handed 310
Helix 3
AA3
A
785 789Right-handed 310
Helix 4
AA4
A
825 846Right-handed alpha
Helix 5
AA5
A
880 892Right-handed alpha
Helix 6
AA6
A
976 980Right-handed 310
Helix 7
AA7
A
981 987Right-handed alpha
Helix 8
AA8
A
1003 1005Right-handed 310
Helix 9
AA9
A
1103 1112Right-handed alpha
Helix 10
AB1
A
1124 1135Right-handed alpha
Helix 11
AB2
A
1144 1157Right-handed alpha
Helix 12
AB3
A
1158 1160Right-handed 310
Helix 13
AB4
A
1165 1173Right-handed alpha
Helix 14
AB5
A
1176 1182Right-handed alpha
Helix 15
AB6
A
1210 1231Right-handed alpha
Helix 16
AB7
A
1242 1246Right-handed 310
Helix 17
AB8
A
1249 1263Right-handed alpha
Helix 18
AB9
A
1274 1277Right-handed 310
Helix 19
AC1
A
1337 1343Right-handed alpha
Helix 20
AC2
A
1365 1373Right-handed alpha
Helix 21
AC3
A
1387 1395Right-handed alpha
Helix 22
AC4
A
1404 1408Right-handed 310
Helix 23
AC5
A
1426 1431Right-handed alpha
Helix 24
AC6
A
1477 1485Right-handed alpha
Helix 25
AC7
A
1496 1506Right-handed alpha
Helix 26
AC8
A
1509 1525Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9V4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 630first strand
Strand 2
A
1162 1163anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
710 713first strand
Strand 2
A
729 732anti-parallel
Strand 3
A
735 738anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 727first strand
Strand 2
A
755 764anti-parallel
Strand 3
A
742 745anti-parallel
Strand 4
A
808 816anti-parallel
Strand 5
A
851 859parallel
Strand 6
A
864 867anti-parallel
Strand 7
A
1265 1272anti-parallel
Strand 8
A
1283 1290anti-parallel
Strand 9
A
1234 1240anti-parallel
Strand 10
A
1191 1194parallel
Strand 11
A
1093 1098parallel
Strand 12
A
1115 1121parallel
Strand 13
A
1139 1141parallel
Back to list of sheets
Back to top of page

There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 727first strand
Strand 2
A
755 764anti-parallel
Strand 3
A
770 779anti-parallel
Strand 4
A
793 804anti-parallel
Strand 5
A
851 859parallel
Strand 6
A
864 867anti-parallel
Strand 7
A
1265 1272anti-parallel
Strand 8
A
1283 1290anti-parallel
Strand 9
A
1234 1240anti-parallel
Strand 10
A
1191 1194parallel
Strand 11
A
1093 1098parallel
Strand 12
A
1115 1121parallel
Strand 13
A
1139 1141parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
896 897first strand
Strand 2
A
903 906anti-parallel
Strand 3
A
909 912anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
992 995first strand
Strand 2
A
1031 1037parallel
Strand 3
A
1007 1014parallel
Strand 4
A
916 919anti-parallel
Strand 5
A
947 955anti-parallel
Strand 6
A
968 973anti-parallel
Strand 7
A
999 1002anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1312 1315first strand
Strand 2
A
1319 1322anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1356 1357first strand
Strand 2
A
1378 1379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1412 1414first strand
Strand 2
A
1420 1422anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il