Analysis of interatomic Contacts of Structural Units in PDB entry:
9V57

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V57 entry

There are 16 chains in PDB entry 9V57 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ALA 2	LEU 181
F	ALA 2	LEU 181
I	ALA 2	LEU 181
L	ALA 2	LEU 181
a	ALA 2	LEU 181
d	ALA 2	LEU 181
g	THR 2	ALA 278
h	THR 2	ALA 278
i	THR 2	ALA 278
j	THR 2	ALA 278
o	ALA 2	LEU 181
r	ALA 2	LEU 181
s	THR 2	ALA 278
t	THR 2	ALA 278
u	THR 2	ALA 278
v	THR 2	ALA 278

There are200 helices in PDB entry 9V57. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	11	22	Right-handed alpha
Helix 2	AA2	C	42	59	Right-handed alpha
Helix 3	AA3	C	78	81	Right-handed 310
Helix 4	AA4	C	82	89	Right-handed alpha
Helix 5	AA5	C	91	95	Right-handed 310
Helix 6	AA6	C	158	163	Right-handed alpha
Helix 7	AA7	C	167	180	Right-handed alpha
Helix 8	AA8	F	11	22	Right-handed alpha
Helix 9	AA9	F	42	59	Right-handed alpha
Helix 10	AB1	F	78	81	Right-handed 310
Helix 11	AB2	F	82	89	Right-handed alpha
Helix 12	AB3	F	91	95	Right-handed 310
Helix 13	AB4	F	158	163	Right-handed alpha
Helix 14	AB5	F	167	180	Right-handed alpha
Helix 15	AB6	I	11	22	Right-handed alpha
Helix 16	AB7	I	42	59	Right-handed alpha
Helix 17	AB8	I	78	81	Right-handed 310
Helix 18	AB9	I	82	89	Right-handed alpha
Helix 19	AC1	I	91	95	Right-handed 310
Helix 20	AC2	I	158	163	Right-handed alpha
Helix 21	AC3	I	167	180	Right-handed alpha
Helix 22	AC4	L	11	22	Right-handed alpha
Helix 23	AC5	L	42	59	Right-handed alpha
Helix 24	AC6	L	78	81	Right-handed 310
Helix 25	AC7	L	82	89	Right-handed alpha
Helix 26	AC8	L	91	95	Right-handed 310
Helix 27	AC9	L	158	163	Right-handed alpha
Helix 28	AD1	L	167	180	Right-handed alpha
Helix 29	AD2	a	11	22	Right-handed alpha
Helix 30	AD3	a	42	59	Right-handed alpha
Helix 31	AD4	a	78	81	Right-handed 310
Helix 32	AD5	a	82	89	Right-handed alpha
Helix 33	AD6	a	91	95	Right-handed 310
Helix 34	AD7	a	158	163	Right-handed alpha
Helix 35	AD8	a	167	180	Right-handed alpha
Helix 36	AD9	d	11	22	Right-handed alpha
Helix 37	AE1	d	42	59	Right-handed alpha
Helix 38	AE2	d	78	81	Right-handed 310
Helix 39	AE3	d	82	89	Right-handed alpha
Helix 40	AE4	d	91	95	Right-handed 310
Helix 41	AE5	d	158	163	Right-handed alpha
Helix 42	AE6	d	167	180	Right-handed alpha
Helix 43	AE7	g	5	19	Right-handed alpha
Helix 44	AE8	g	28	35	Right-handed 310
Helix 45	AE9	g	38	51	Right-handed alpha
Helix 46	AF1	g	53	58	Right-handed alpha
Helix 47	AF2	g	59	61	Right-handed 310
Helix 48	AF3	g	62	72	Right-handed alpha
Helix 49	AF4	g	76	90	Right-handed alpha
Helix 50	AF5	g	91	100	Right-handed alpha
Helix 51	AF6	g	101	109	Right-handed alpha
Helix 52	AF7	g	124	131	Right-handed alpha
Helix 53	AF8	g	140	145	Right-handed alpha
Helix 54	AF9	g	164	168	Right-handed 310
Helix 55	AG1	g	171	178	Right-handed alpha
Helix 56	AG2	g	179	181	Right-handed 310
Helix 57	AG3	g	183	193	Right-handed alpha
Helix 58	AG4	g	209	224	Right-handed alpha
Helix 59	AG5	g	246	252	Right-handed alpha
Helix 60	AG6	g	265	278	Right-handed alpha
Helix 61	AG7	h	5	19	Right-handed alpha
Helix 62	AG8	h	28	35	Right-handed 310
Helix 63	AG9	h	38	51	Right-handed alpha
Helix 64	AH1	h	53	58	Right-handed alpha
Helix 65	AH2	h	59	61	Right-handed 310
Helix 66	AH3	h	62	72	Right-handed alpha
Helix 67	AH4	h	76	90	Right-handed alpha
Helix 68	AH5	h	91	100	Right-handed alpha
Helix 69	AH6	h	101	109	Right-handed alpha
Helix 70	AH7	h	124	131	Right-handed alpha
Helix 71	AH8	h	140	145	Right-handed alpha
Helix 72	AH9	h	164	168	Right-handed 310
Helix 73	AI1	h	171	178	Right-handed alpha
Helix 74	AI2	h	179	181	Right-handed 310
Helix 75	AI3	h	183	193	Right-handed alpha
Helix 76	AI4	h	209	224	Right-handed alpha
Helix 77	AI5	h	246	252	Right-handed alpha
Helix 78	AI6	h	265	278	Right-handed alpha
Helix 79	AI7	i	5	19	Right-handed alpha
Helix 80	AI8	i	28	35	Right-handed 310
Helix 81	AI9	i	38	51	Right-handed alpha
Helix 82	AJ1	i	53	58	Right-handed alpha
Helix 83	AJ2	i	59	61	Right-handed 310
Helix 84	AJ3	i	62	72	Right-handed alpha
Helix 85	AJ4	i	76	90	Right-handed alpha
Helix 86	AJ5	i	91	100	Right-handed alpha
Helix 87	AJ6	i	101	109	Right-handed alpha
Helix 88	AJ7	i	124	131	Right-handed alpha
Helix 89	AJ8	i	140	145	Right-handed alpha
Helix 90	AJ9	i	164	168	Right-handed 310
Helix 91	AK1	i	171	178	Right-handed alpha
Helix 92	AK2	i	179	181	Right-handed 310
Helix 93	AK3	i	183	193	Right-handed alpha
Helix 94	AK4	i	209	224	Right-handed alpha
Helix 95	AK5	i	246	252	Right-handed alpha
Helix 96	AK6	i	265	278	Right-handed alpha
Helix 97	AK7	j	5	19	Right-handed alpha
Helix 98	AK8	j	28	35	Right-handed 310
Helix 99	AK9	j	38	51	Right-handed alpha
Helix 100	AL1	j	53	58	Right-handed alpha
Helix 101	AL2	j	59	61	Right-handed 310
Helix 102	AL3	j	62	72	Right-handed alpha
Helix 103	AL4	j	76	90	Right-handed alpha
Helix 104	AL5	j	91	100	Right-handed alpha
Helix 105	AL6	j	101	109	Right-handed alpha
Helix 106	AL7	j	124	131	Right-handed alpha
Helix 107	AL8	j	140	145	Right-handed alpha
Helix 108	AL9	j	164	168	Right-handed 310
Helix 109	AM1	j	171	178	Right-handed alpha
Helix 110	AM2	j	179	181	Right-handed 310
Helix 111	AM3	j	183	194	Right-handed alpha
Helix 112	AM4	j	209	224	Right-handed alpha
Helix 113	AM5	j	246	252	Right-handed alpha
Helix 114	AM6	j	265	278	Right-handed alpha
Helix 115	AM7	o	11	22	Right-handed alpha
Helix 116	AM8	o	42	59	Right-handed alpha
Helix 117	AM9	o	78	81	Right-handed 310
Helix 118	AN1	o	82	89	Right-handed alpha
Helix 119	AN2	o	91	95	Right-handed 310
Helix 120	AN3	o	158	163	Right-handed alpha
Helix 121	AN4	o	167	180	Right-handed alpha
Helix 122	AN5	r	11	22	Right-handed alpha
Helix 123	AN6	r	42	59	Right-handed alpha
Helix 124	AN7	r	78	81	Right-handed 310
Helix 125	AN8	r	82	89	Right-handed alpha
Helix 126	AN9	r	91	95	Right-handed 310
Helix 127	AO1	r	158	163	Right-handed alpha
Helix 128	AO2	r	167	180	Right-handed alpha
Helix 129	AO3	s	5	19	Right-handed alpha
Helix 130	AO4	s	28	35	Right-handed 310
Helix 131	AO5	s	38	51	Right-handed alpha
Helix 132	AO6	s	53	58	Right-handed alpha
Helix 133	AO7	s	59	61	Right-handed 310
Helix 134	AO8	s	62	72	Right-handed alpha
Helix 135	AO9	s	76	90	Right-handed alpha
Helix 136	AP1	s	91	100	Right-handed alpha
Helix 137	AP2	s	101	109	Right-handed alpha
Helix 138	AP3	s	124	131	Right-handed alpha
Helix 139	AP4	s	140	145	Right-handed alpha
Helix 140	AP5	s	164	168	Right-handed 310
Helix 141	AP6	s	171	178	Right-handed alpha
Helix 142	AP7	s	179	181	Right-handed 310
Helix 143	AP8	s	183	193	Right-handed alpha
Helix 144	AP9	s	209	224	Right-handed alpha
Helix 145	AQ1	s	246	252	Right-handed alpha
Helix 146	AQ2	s	265	278	Right-handed alpha
Helix 147	AQ3	t	5	19	Right-handed alpha
Helix 148	AQ4	t	28	35	Right-handed 310
Helix 149	AQ5	t	38	51	Right-handed alpha
Helix 150	AQ6	t	53	58	Right-handed alpha
Helix 151	AQ7	t	59	61	Right-handed 310
Helix 152	AQ8	t	62	72	Right-handed alpha
Helix 153	AQ9	t	76	90	Right-handed alpha
Helix 154	AR1	t	91	100	Right-handed alpha
Helix 155	AR2	t	101	109	Right-handed alpha
Helix 156	AR3	t	124	131	Right-handed alpha
Helix 157	AR4	t	140	145	Right-handed alpha
Helix 158	AR5	t	164	168	Right-handed 310
Helix 159	AR6	t	171	178	Right-handed alpha
Helix 160	AR7	t	179	181	Right-handed 310
Helix 161	AR8	t	183	193	Right-handed alpha
Helix 162	AR9	t	209	224	Right-handed alpha
Helix 163	AS1	t	246	252	Right-handed alpha
Helix 164	AS2	t	265	278	Right-handed alpha
Helix 165	AS3	u	5	19	Right-handed alpha
Helix 166	AS4	u	28	35	Right-handed 310
Helix 167	AS5	u	38	51	Right-handed alpha
Helix 168	AS6	u	53	58	Right-handed alpha
Helix 169	AS7	u	59	61	Right-handed 310
Helix 170	AS8	u	62	72	Right-handed alpha
Helix 171	AS9	u	76	90	Right-handed alpha
Helix 172	AT1	u	91	100	Right-handed alpha
Helix 173	AT2	u	101	109	Right-handed alpha
Helix 174	AT3	u	124	131	Right-handed alpha
Helix 175	AT4	u	140	145	Right-handed alpha
Helix 176	AT5	u	164	168	Right-handed 310
Helix 177	AT6	u	171	178	Right-handed alpha
Helix 178	AT7	u	179	181	Right-handed 310
Helix 179	AT8	u	183	193	Right-handed alpha
Helix 180	AT9	u	209	224	Right-handed alpha
Helix 181	AU1	u	246	252	Right-handed alpha
Helix 182	AU2	u	265	278	Right-handed alpha
Helix 183	AU3	v	5	19	Right-handed alpha
Helix 184	AU4	v	28	35	Right-handed 310
Helix 185	AU5	v	38	51	Right-handed alpha
Helix 186	AU6	v	53	58	Right-handed alpha
Helix 187	AU7	v	59	61	Right-handed 310
Helix 188	AU8	v	62	72	Right-handed alpha
Helix 189	AU9	v	76	90	Right-handed alpha
Helix 190	AV1	v	91	100	Right-handed alpha
Helix 191	AV2	v	101	109	Right-handed alpha
Helix 192	AV3	v	124	131	Right-handed alpha
Helix 193	AV4	v	140	145	Right-handed alpha
Helix 194	AV5	v	164	168	Right-handed 310
Helix 195	AV6	v	171	178	Right-handed alpha
Helix 196	AV7	v	179	181	Right-handed 310
Helix 197	AV8	v	183	193	Right-handed alpha
Helix 198	AV9	v	209	224	Right-handed alpha
Helix 199	AW1	v	246	252	Right-handed alpha
Helix 200	AW2	v	265	278	Right-handed alpha

There are 16 sheets in PDB entry 9V57. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	5	8	parallel
Strand 3	C	62	71	parallel
Strand 4	C	103	113	anti-parallel
Strand 5	C	118	129	anti-parallel
Strand 6	C	145	147	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	31	first strand
Strand 2	F	5	8	parallel
Strand 3	F	62	71	parallel
Strand 4	F	103	113	anti-parallel
Strand 5	F	118	129	anti-parallel
Strand 6	F	145	147	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	28	31	first strand
Strand 2	I	5	8	parallel
Strand 3	I	62	71	parallel
Strand 4	I	103	113	anti-parallel
Strand 5	I	118	129	anti-parallel
Strand 6	I	145	147	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	31	first strand
Strand 2	L	5	8	parallel
Strand 3	L	62	71	parallel
Strand 4	L	103	113	anti-parallel
Strand 5	L	118	129	anti-parallel
Strand 6	L	145	147	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	28	31	first strand
Strand 2	a	5	8	parallel
Strand 3	a	62	71	parallel
Strand 4	a	103	113	anti-parallel
Strand 5	a	118	129	anti-parallel
Strand 6	a	145	147	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	28	31	first strand
Strand 2	d	5	8	parallel
Strand 3	d	62	71	parallel
Strand 4	d	103	113	anti-parallel
Strand 5	d	118	129	anti-parallel
Strand 6	d	145	147	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	135	138	first strand
Strand 2	g	153	157	parallel
Strand 3	g	114	117	parallel
Strand 4	g	22	26	parallel
Strand 5	g	197	201	parallel
Strand 6	g	236	240	parallel
Strand 7	g	256	260	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	135	138	first strand
Strand 2	h	153	157	parallel
Strand 3	h	114	117	parallel
Strand 4	h	22	26	parallel
Strand 5	h	197	201	parallel
Strand 6	h	236	240	parallel
Strand 7	h	256	260	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	135	138	first strand
Strand 2	i	153	157	parallel
Strand 3	i	114	117	parallel
Strand 4	i	22	26	parallel
Strand 5	i	197	201	parallel
Strand 6	i	236	240	parallel
Strand 7	i	256	260	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	135	138	first strand
Strand 2	j	153	157	parallel
Strand 3	j	114	117	parallel
Strand 4	j	22	26	parallel
Strand 5	j	197	201	parallel
Strand 6	j	236	240	parallel
Strand 7	j	256	260	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	28	31	first strand
Strand 2	o	5	8	parallel
Strand 3	o	62	71	parallel
Strand 4	o	103	113	anti-parallel
Strand 5	o	118	129	anti-parallel
Strand 6	o	145	147	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	28	31	first strand
Strand 2	r	5	8	parallel
Strand 3	r	62	71	parallel
Strand 4	r	103	113	anti-parallel
Strand 5	r	118	129	anti-parallel
Strand 6	r	145	147	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	135	138	first strand
Strand 2	s	153	157	parallel
Strand 3	s	114	117	parallel
Strand 4	s	22	26	parallel
Strand 5	s	197	201	parallel
Strand 6	s	236	240	parallel
Strand 7	s	256	260	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	135	138	first strand
Strand 2	t	153	157	parallel
Strand 3	t	114	117	parallel
Strand 4	t	22	26	parallel
Strand 5	t	197	201	parallel
Strand 6	t	236	240	parallel
Strand 7	t	256	260	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	135	138	first strand
Strand 2	u	153	157	parallel
Strand 3	u	114	117	parallel
Strand 4	u	22	26	parallel
Strand 5	u	197	201	parallel
Strand 6	u	236	240	parallel
Strand 7	u	256	260	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	135	138	first strand
Strand 2	v	153	157	parallel
Strand 3	v	114	117	parallel
Strand 4	v	22	26	parallel
Strand 5	v	197	201	parallel
Strand 6	v	236	240	parallel
Strand 7	v	256	260	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V57

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V57