Analysis of interatomic Contacts of Structural Units in PDB entry:
9V5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9V5F entry

There are 2 chains in PDB entry 9V5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 11VAL 421
B
 ARG 11VAL 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9V5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 21Right-handed alpha
Helix 2
AA2
A
24 33Right-handed alpha
Helix 3
AA3
A
34 45Right-handed alpha
Helix 4
AA4
A
48 63Right-handed alpha
Helix 5
AA5
A
64 67Right-handed 310
Helix 6
AA6
A
124 137Right-handed alpha
Helix 7
AA7
A
142 153Right-handed alpha
Helix 8
AA8
A
155 165Right-handed alpha
Helix 9
AA9
A
166 171Right-handed 310
Helix 10
AB1
A
193 201Right-handed alpha
Helix 11
AB2
A
203 213Right-handed alpha
Helix 12
AB3
A
215 221Right-handed alpha
Helix 13
AB4
A
221 236Right-handed alpha
Helix 14
AB5
A
275 285Right-handed alpha
Helix 15
AB6
A
291 308Right-handed alpha
Helix 16
AB7
A
351 367Right-handed alpha
Helix 17
AB8
A
368 383Right-handed alpha
Helix 18
AB9
A
387 391Right-handed 310
Helix 19
AC1
A
416 420Right-handed 310
Helix 20
AC2
B
12 21Right-handed alpha
Helix 21
AC3
B
24 45Right-handed alpha
Helix 22
AC4
B
48 63Right-handed alpha
Helix 23
AC5
B
64 68Right-handed 310
Helix 24
AC6
B
124 137Right-handed alpha
Helix 25
AC7
B
142 152Right-handed alpha
Helix 26
AC8
B
155 164Right-handed alpha
Helix 27
AC9
B
165 166Right-handed 310
Helix 28
AD1
B
167 171Right-handed 310
Helix 29
AD2
B
193 201Right-handed alpha
Helix 30
AD3
B
203 214Right-handed alpha
Helix 31
AD4
B
215 221Right-handed alpha
Helix 32
AD5
B
221 236Right-handed alpha
Helix 33
AD6
B
275 285Right-handed alpha
Helix 34
AD7
B
291 308Right-handed alpha
Helix 35
AD8
B
351 367Right-handed alpha
Helix 36
AD9
B
368 383Right-handed alpha
Helix 37
AE1
B
415 421Right-handed alpha
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There are 2 sheets in PDB entry 9V5F. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 96first strand
Strand 2
A
101 107anti-parallel
Strand 3
A
174 181anti-parallel
Strand 4
A
184 192anti-parallel
Strand 5
A
249 256anti-parallel
Strand 6
A
265 271anti-parallel
Strand 7
A
325 331anti-parallel
Strand 8
A
342 346anti-parallel
Strand 9
A
395 403anti-parallel
Strand 10
A
407 414anti-parallel
Strand 11
A
90 96anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 96first strand
Strand 2
B
101 107anti-parallel
Strand 3
B
174 180anti-parallel
Strand 4
B
186 192anti-parallel
Strand 5
B
249 256anti-parallel
Strand 6
B
265 271anti-parallel
Strand 7
B
325 331anti-parallel
Strand 8
B
342 346anti-parallel
Strand 9
B
395 403anti-parallel
Strand 10
B
407 414anti-parallel
Strand 11
B
90 96anti-parallel
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