Analysis of interatomic Contacts of Structural Units in PDB entry:
9V5H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V5H entry

There are 12 chains in PDB entry 9V5H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 300
B	MET 1	GLN 300
C	MET 1	GLN 300
D	MET 1	GLN 300
E	MET 1	GLN 300
F	MET 1	GLN 300
G	MET 316	ASP 657
H	MET 316	ASP 657
I	MET 316	ASP 657
J	MET 316	ASP 657
K	MET 316	ASP 657
L	MET 316	ASP 657

There are143 helices in PDB entry 9V5H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	21	Right-handed alpha
Helix 2	AA2	A	44	52	Right-handed alpha
Helix 3	AA3	A	64	75	Right-handed alpha
Helix 4	AA4	A	89	94	Right-handed alpha
Helix 5	AA5	A	115	123	Right-handed alpha
Helix 6	AA6	A	157	183	Right-handed alpha
Helix 7	AA7	A	202	207	Right-handed 310
Helix 8	AA8	A	213	224	Right-handed alpha
Helix 9	AA9	A	288	296	Right-handed alpha
Helix 10	AB1	B	8	22	Right-handed alpha
Helix 11	AB2	B	44	52	Right-handed alpha
Helix 12	AB3	B	64	75	Right-handed alpha
Helix 13	AB4	B	89	94	Right-handed alpha
Helix 14	AB5	B	115	124	Right-handed alpha
Helix 15	AB6	B	157	183	Right-handed alpha
Helix 16	AB7	B	191	195	Right-handed 310
Helix 17	AB8	B	202	207	Right-handed 310
Helix 18	AB9	B	213	224	Right-handed alpha
Helix 19	AC1	B	288	296	Right-handed alpha
Helix 20	AC2	C	8	23	Right-handed alpha
Helix 21	AC3	C	44	52	Right-handed alpha
Helix 22	AC4	C	64	75	Right-handed alpha
Helix 23	AC5	C	89	94	Right-handed alpha
Helix 24	AC6	C	115	123	Right-handed alpha
Helix 25	AC7	C	157	183	Right-handed alpha
Helix 26	AC8	C	191	195	Right-handed 310
Helix 27	AC9	C	213	224	Right-handed alpha
Helix 28	AD1	C	288	297	Right-handed alpha
Helix 29	AD2	D	8	23	Right-handed alpha
Helix 30	AD3	D	44	52	Right-handed alpha
Helix 31	AD4	D	64	75	Right-handed alpha
Helix 32	AD5	D	89	94	Right-handed alpha
Helix 33	AD6	D	115	121	Right-handed alpha
Helix 34	AD7	D	157	183	Right-handed alpha
Helix 35	AD8	D	202	207	Right-handed 310
Helix 36	AD9	D	213	224	Right-handed alpha
Helix 37	AE1	D	288	297	Right-handed alpha
Helix 38	AE2	E	8	23	Right-handed alpha
Helix 39	AE3	E	44	53	Right-handed alpha
Helix 40	AE4	E	64	75	Right-handed alpha
Helix 41	AE5	E	89	94	Right-handed alpha
Helix 42	AE6	E	115	122	Right-handed alpha
Helix 43	AE7	E	157	183	Right-handed alpha
Helix 44	AE8	E	191	195	Right-handed 310
Helix 45	AE9	E	202	206	Right-handed 310
Helix 46	AF1	E	213	224	Right-handed alpha
Helix 47	AF2	E	288	297	Right-handed alpha
Helix 48	AF3	F	8	22	Right-handed alpha
Helix 49	AF4	F	44	53	Right-handed alpha
Helix 50	AF5	F	64	75	Right-handed alpha
Helix 51	AF6	F	89	94	Right-handed alpha
Helix 52	AF7	F	115	123	Right-handed alpha
Helix 53	AF8	F	157	183	Right-handed alpha
Helix 54	AF9	F	191	195	Right-handed 310
Helix 55	AG1	F	202	207	Right-handed 310
Helix 56	AG2	F	213	224	Right-handed alpha
Helix 57	AG3	F	289	297	Right-handed alpha
Helix 58	AG4	G	325	336	Right-handed alpha
Helix 59	AG5	G	350	354	Right-handed 310
Helix 60	AG6	G	373	383	Right-handed alpha
Helix 61	AG7	G	394	401	Right-handed alpha
Helix 62	AG8	G	401	423	Right-handed alpha
Helix 63	AG9	G	459	482	Right-handed alpha
Helix 64	AH1	G	509	522	Right-handed alpha
Helix 65	AH2	G	528	531	Right-handed 310
Helix 66	AH3	G	540	553	Right-handed alpha
Helix 67	AH4	G	574	586	Right-handed alpha
Helix 68	AH5	G	590	594	Right-handed 310
Helix 69	AH6	G	623	631	Right-handed alpha
Helix 70	AH7	G	637	652	Right-handed alpha
Helix 71	AH8	H	325	336	Right-handed alpha
Helix 72	AH9	H	350	354	Right-handed 310
Helix 73	AI1	H	355	359	Right-handed 310
Helix 74	AI2	H	373	383	Right-handed alpha
Helix 75	AI3	H	394	401	Right-handed alpha
Helix 76	AI4	H	401	424	Right-handed alpha
Helix 77	AI5	H	432	436	Right-handed 310
Helix 78	AI6	H	461	482	Right-handed alpha
Helix 79	AI7	H	509	522	Right-handed alpha
Helix 80	AI8	H	528	532	Right-handed 310
Helix 81	AI9	H	539	553	Right-handed alpha
Helix 82	AJ1	H	554	557	Right-handed 310
Helix 83	AJ2	H	574	586	Right-handed alpha
Helix 84	AJ3	H	587	594	Right-handed 310
Helix 85	AJ4	H	623	631	Right-handed alpha
Helix 86	AJ5	H	638	652	Right-handed alpha
Helix 87	AJ6	I	325	336	Right-handed alpha
Helix 88	AJ7	I	350	354	Right-handed 310
Helix 89	AJ8	I	355	359	Right-handed 310
Helix 90	AJ9	I	373	383	Right-handed alpha
Helix 91	AK1	I	396	401	Right-handed alpha
Helix 92	AK2	I	401	409	Right-handed alpha
Helix 93	AK3	I	410	423	Right-handed alpha
Helix 94	AK4	I	432	436	Right-handed 310
Helix 95	AK5	I	461	480	Right-handed alpha
Helix 96	AK6	I	509	521	Right-handed alpha
Helix 97	AK7	I	528	531	Right-handed 310
Helix 98	AK8	I	540	553	Right-handed alpha
Helix 99	AK9	I	554	557	Right-handed 310
Helix 100	AL1	I	574	586	Right-handed alpha
Helix 101	AL2	I	590	594	Right-handed 310
Helix 102	AL3	I	623	630	Right-handed alpha
Helix 103	AL4	I	637	652	Right-handed alpha
Helix 104	AL5	J	325	336	Right-handed alpha
Helix 105	AL6	J	350	354	Right-handed 310
Helix 106	AL7	J	373	383	Right-handed alpha
Helix 107	AL8	J	396	401	Right-handed alpha
Helix 108	AL9	J	401	410	Right-handed alpha
Helix 109	AM1	J	410	424	Right-handed alpha
Helix 110	AM2	J	432	436	Right-handed 310
Helix 111	AM3	J	460	482	Right-handed alpha
Helix 112	AM4	J	509	521	Right-handed alpha
Helix 113	AM5	J	540	552	Right-handed alpha
Helix 114	AM6	J	553	557	Right-handed 310
Helix 115	AM7	J	574	587	Right-handed alpha
Helix 116	AM8	J	590	594	Right-handed 310
Helix 117	AM9	J	623	631	Right-handed alpha
Helix 118	AN1	J	637	652	Right-handed alpha
Helix 119	AN2	K	325	336	Right-handed alpha
Helix 120	AN3	K	373	383	Right-handed alpha
Helix 121	AN4	K	394	401	Right-handed alpha
Helix 122	AN5	K	401	423	Right-handed alpha
Helix 123	AN6	K	432	436	Right-handed 310
Helix 124	AN7	K	461	481	Right-handed alpha
Helix 125	AN8	K	509	521	Right-handed alpha
Helix 126	AN9	K	540	552	Right-handed alpha
Helix 127	AO1	K	553	557	Right-handed 310
Helix 128	AO2	K	574	586	Right-handed alpha
Helix 129	AO3	K	588	594	Right-handed 310
Helix 130	AO4	K	623	630	Right-handed alpha
Helix 131	AO5	K	637	652	Right-handed alpha
Helix 132	AO6	L	325	336	Right-handed alpha
Helix 133	AO7	L	373	383	Right-handed alpha
Helix 134	AO8	L	394	401	Right-handed alpha
Helix 135	AO9	L	401	410	Right-handed alpha
Helix 136	AP1	L	410	423	Right-handed alpha
Helix 137	AP2	L	459	480	Right-handed alpha
Helix 138	AP3	L	509	521	Right-handed alpha
Helix 139	AP4	L	540	552	Right-handed alpha
Helix 140	AP5	L	573	586	Right-handed alpha
Helix 141	AP6	L	588	594	Right-handed 310
Helix 142	AP7	L	623	630	Right-handed alpha
Helix 143	AP8	L	638	652	Right-handed alpha

There are 44 sheets in PDB entry 9V5H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	26	29	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	82	first strand
Strand 2	A	100	104	parallel
Strand 3	A	128	133	anti-parallel
Strand 4	A	144	150	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	235	first strand
Strand 2	A	238	248	anti-parallel
Strand 3	A	273	280	anti-parallel
Strand 4	A	266	268	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	25	26	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	79	82	parallel
Strand 3	B	100	104	parallel
Strand 4	B	128	134	anti-parallel
Strand 5	B	144	150	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	235	first strand
Strand 2	B	238	248	anti-parallel
Strand 3	B	273	281	anti-parallel
Strand 4	B	266	268	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	235	first strand
Strand 2	B	238	248	anti-parallel
Strand 3	B	273	281	anti-parallel
Strand 4	B	286	287	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	30	first strand
Strand 2	C	2	7	parallel
Strand 3	C	78	82	parallel
Strand 4	C	99	104	parallel
Strand 5	C	128	134	anti-parallel
Strand 6	C	144	150	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	235	first strand
Strand 2	C	238	248	anti-parallel
Strand 3	C	273	281	anti-parallel
Strand 4	C	266	268	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	57	first strand
Strand 2	D	25	30	parallel
Strand 3	D	2	7	parallel
Strand 4	D	78	82	parallel
Strand 5	D	100	104	parallel
Strand 6	D	127	134	anti-parallel
Strand 7	D	144	151	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	235	first strand
Strand 2	D	238	242	anti-parallel
Strand 3	D	279	281	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	248	first strand
Strand 2	D	273	275	anti-parallel
Strand 3	D	266	268	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	26	30	parallel
Strand 3	E	56	57	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	82	first strand
Strand 2	E	100	104	parallel
Strand 3	E	128	134	anti-parallel
Strand 4	E	144	150	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	231	235	first strand
Strand 2	E	238	248	anti-parallel
Strand 3	E	273	280	anti-parallel
Strand 4	E	267	268	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	5	first strand
Strand 2	F	26	29	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	82	first strand
Strand 2	F	100	104	parallel
Strand 3	F	128	134	anti-parallel
Strand 4	F	144	150	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	231	235	first strand
Strand 2	F	238	248	anti-parallel
Strand 3	F	273	281	anti-parallel
Strand 4	F	266	268	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	231	235	first strand
Strand 2	F	238	248	anti-parallel
Strand 3	F	273	281	anti-parallel
Strand 4	F	286	288	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	362	365	first strand
Strand 2	G	342	346	parallel
Strand 3	G	317	321	parallel
Strand 4	G	385	388	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	427	430	first strand
Strand 2	G	485	489	parallel
Strand 3	G	563	564	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	493	494	first strand
Strand 2	G	538	539	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	525	527	first strand
Strand 2	G	600	602	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	534	536	first strand
Strand 2	G	571	573	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	362	365	first strand
Strand 2	H	342	346	parallel
Strand 3	H	317	321	parallel
Strand 4	H	385	388	parallel
Strand 5	H	426	430	parallel
Strand 6	H	485	490	parallel
Strand 7	H	563	565	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	525	527	first strand
Strand 2	H	600	602	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	534	535	first strand
Strand 2	H	572	573	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	362	366	first strand
Strand 2	I	342	347	parallel
Strand 3	I	317	321	parallel
Strand 4	I	385	388	parallel
Strand 5	I	426	430	parallel
Strand 6	I	485	490	parallel
Strand 7	I	561	565	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	493	494	first strand
Strand 2	I	538	539	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	525	527	first strand
Strand 2	I	600	602	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	534	535	first strand
Strand 2	I	572	573	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	362	366	first strand
Strand 2	J	342	347	parallel
Strand 3	J	317	321	parallel
Strand 4	J	385	388	parallel
Strand 5	J	426	430	parallel
Strand 6	J	485	490	parallel
Strand 7	J	563	565	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	493	494	first strand
Strand 2	J	538	539	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	526	528	first strand
Strand 2	J	601	603	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	534	536	first strand
Strand 2	J	571	573	anti-parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	362	365	first strand
Strand 2	K	342	346	parallel
Strand 3	K	317	321	parallel
Strand 4	K	385	388	parallel
Strand 5	K	426	430	parallel
Strand 6	K	485	489	parallel
Strand 7	K	563	564	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	493	494	first strand
Strand 2	K	538	539	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	525	528	first strand
Strand 2	K	600	603	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	534	536	first strand
Strand 2	K	571	573	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	362	365	first strand
Strand 2	L	342	346	parallel
Strand 3	L	317	321	parallel
Strand 4	L	385	388	parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	427	430	first strand
Strand 2	L	485	490	parallel
Strand 3	L	561	565	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	493	494	first strand
Strand 2	L	538	539	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	525	528	first strand
Strand 2	L	600	603	parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	535	536	first strand
Strand 2	L	571	572	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V5H

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V5H