Analysis of interatomic Contacts of Structural Units in PDB entry:
9V5O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9V5O entry

There is 1 chain in PDB entry 9V5O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7VAL 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 9V5O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 86Right-handed 310
Helix 2
AA2
A
153 157Right-handed 310
Helix 3
AA3
A
212 216Right-handed 310
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There are 5 sheets in PDB entry 9V5O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
73 79anti-parallel
Strand 4
A
65 70anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 16first strand
Strand 2
A
105 109parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
36 41anti-parallel
Strand 5
A
48 51anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 16first strand
Strand 2
A
105 109parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
99 101anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
143 150anti-parallel
Strand 3
A
203 208anti-parallel
Strand 4
A
193 198anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
235 239parallel
Strand 3
A
217 223anti-parallel
Strand 4
A
159 164anti-parallel
Strand 5
A
170 176anti-parallel
Strand 6
A
183 185anti-parallel
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