Analysis of interatomic Contacts of Structural Units in PDB entry:
9V5R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V5R entry

There are 3 chains in PDB entry 9V5R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 1032
B	MET 1	PHE 1033
C	MET 1	SER 1034

There are126 helices in PDB entry 9V5R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	7	Right-handed 310
Helix 2	AA2	A	8	30	Right-handed alpha
Helix 3	AA3	A	53	61	Right-handed alpha
Helix 4	AA4	A	61	67	Right-handed alpha
Helix 5	AA5	A	99	115	Right-handed alpha
Helix 6	AA6	A	116	118	Right-handed 310
Helix 7	AA7	A	119	126	Right-handed alpha
Helix 8	AA8	A	150	168	Right-handed alpha
Helix 9	AA9	A	189	197	Right-handed alpha
Helix 10	AB1	A	199	210	Right-handed alpha
Helix 11	AB2	A	242	248	Right-handed alpha
Helix 12	AB3	A	262	265	Right-handed alpha
Helix 13	AB4	A	299	314	Right-handed alpha
Helix 14	AB5	A	315	317	Right-handed 310
Helix 15	AB6	A	329	360	Right-handed alpha
Helix 16	AB7	A	365	386	Right-handed alpha
Helix 17	AB8	A	391	424	Right-handed alpha
Helix 18	AB9	A	426	450	Right-handed alpha
Helix 19	AC1	A	460	488	Right-handed alpha
Helix 20	AC2	A	488	496	Right-handed alpha
Helix 21	AC3	A	516	538	Right-handed alpha
Helix 22	AC4	A	539	559	Right-handed alpha
Helix 23	AC5	A	583	602	Right-handed alpha
Helix 24	AC6	A	633	637	Right-handed 310
Helix 25	AC7	A	643	655	Right-handed alpha
Helix 26	AC8	A	691	707	Right-handed alpha
Helix 27	AC9	A	732	739	Right-handed alpha
Helix 28	AD1	A	744	756	Right-handed alpha
Helix 29	AD2	A	777	780	Right-handed 310
Helix 30	AD3	A	782	788	Right-handed 310
Helix 31	AD4	A	836	841	Right-handed alpha
Helix 32	AD5	A	842	849	Right-handed alpha
Helix 33	AD6	A	861	867	Right-handed alpha
Helix 34	AD7	A	872	893	Right-handed alpha
Helix 35	AD8	A	898	903	Right-handed alpha
Helix 36	AD9	A	904	920	Right-handed alpha
Helix 37	AE1	A	924	955	Right-handed alpha
Helix 38	AE2	A	964	969	Right-handed alpha
Helix 39	AE3	A	971	986	Right-handed alpha
Helix 40	AE4	A	986	991	Right-handed alpha
Helix 41	AE5	A	996	1017	Right-handed alpha
Helix 42	AE6	A	1021	1032	Right-handed alpha
Helix 43	AE7	B	2	7	Right-handed alpha
Helix 44	AE8	B	8	28	Right-handed alpha
Helix 45	AE9	B	53	61	Right-handed alpha
Helix 46	AF1	B	61	68	Right-handed alpha
Helix 47	AF2	B	99	115	Right-handed alpha
Helix 48	AF3	B	116	118	Right-handed 310
Helix 49	AF4	B	119	126	Right-handed alpha
Helix 50	AF5	B	150	167	Right-handed alpha
Helix 51	AF6	B	189	197	Right-handed alpha
Helix 52	AF7	B	199	211	Right-handed alpha
Helix 53	AF8	B	242	248	Right-handed alpha
Helix 54	AF9	B	262	265	Right-handed alpha
Helix 55	AG1	B	303	314	Right-handed alpha
Helix 56	AG2	B	329	359	Right-handed alpha
Helix 57	AG3	B	365	386	Right-handed alpha
Helix 58	AG4	B	391	424	Right-handed alpha
Helix 59	AG5	B	426	438	Right-handed alpha
Helix 60	AG6	B	440	454	Right-handed alpha
Helix 61	AG7	B	455	459	Right-handed 310
Helix 62	AG8	B	461	496	Right-handed alpha
Helix 63	AG9	B	517	537	Right-handed alpha
Helix 64	AH1	B	538	558	Right-handed alpha
Helix 65	AH2	B	583	588	Right-handed alpha
Helix 66	AH3	B	590	602	Right-handed alpha
Helix 67	AH4	B	633	637	Right-handed 310
Helix 68	AH5	B	639	642	Right-handed 310
Helix 69	AH6	B	643	655	Right-handed alpha
Helix 70	AH7	B	692	707	Right-handed alpha
Helix 71	AH8	B	732	740	Right-handed alpha
Helix 72	AH9	B	742	755	Right-handed alpha
Helix 73	AI1	B	777	780	Right-handed 310
Helix 74	AI2	B	783	788	Right-handed 310
Helix 75	AI3	B	836	849	Right-handed alpha
Helix 76	AI4	B	861	870	Right-handed alpha
Helix 77	AI5	B	872	892	Right-handed alpha
Helix 78	AI6	B	896	903	Right-handed alpha
Helix 79	AI7	B	904	920	Right-handed alpha
Helix 80	AI8	B	924	957	Right-handed alpha
Helix 81	AI9	B	961	986	Right-handed alpha
Helix 82	AJ1	B	986	992	Right-handed alpha
Helix 83	AJ2	B	997	1017	Right-handed alpha
Helix 84	AJ3	B	1021	1031	Right-handed alpha
Helix 85	AJ4	C	2	7	Right-handed alpha
Helix 86	AJ5	C	8	25	Right-handed alpha
Helix 87	AJ6	C	26	30	Right-handed 310
Helix 88	AJ7	C	53	66	Right-handed alpha
Helix 89	AJ8	C	99	112	Right-handed alpha
Helix 90	AJ9	C	120	126	Right-handed alpha
Helix 91	AK1	C	150	162	Right-handed alpha
Helix 92	AK2	C	162	168	Right-handed alpha
Helix 93	AK3	C	189	197	Right-handed alpha
Helix 94	AK4	C	199	210	Right-handed alpha
Helix 95	AK5	C	242	248	Right-handed alpha
Helix 96	AK6	C	298	314	Right-handed alpha
Helix 97	AK7	C	315	317	Right-handed 310
Helix 98	AK8	C	329	359	Right-handed alpha
Helix 99	AK9	C	361	366	Right-handed alpha
Helix 100	AL1	C	366	386	Right-handed alpha
Helix 101	AL2	C	391	423	Right-handed alpha
Helix 102	AL3	C	426	434	Right-handed alpha
Helix 103	AL4	C	439	458	Right-handed alpha
Helix 104	AL5	C	461	496	Right-handed alpha
Helix 105	AL6	C	514	535	Right-handed alpha
Helix 106	AL7	C	538	559	Right-handed alpha
Helix 107	AL8	C	583	601	Right-handed alpha
Helix 108	AL9	C	633	637	Right-handed 310
Helix 109	AM1	C	643	656	Right-handed alpha
Helix 110	AM2	C	692	708	Right-handed alpha
Helix 111	AM3	C	732	740	Right-handed alpha
Helix 112	AM4	C	742	755	Right-handed alpha
Helix 113	AM5	C	777	780	Right-handed 310
Helix 114	AM6	C	782	788	Right-handed 310
Helix 115	AM7	C	836	839	Right-handed 310
Helix 116	AM8	C	840	850	Right-handed alpha
Helix 117	AM9	C	861	893	Right-handed alpha
Helix 118	AN1	C	896	900	Right-handed 310
Helix 119	AN2	C	901	903	Right-handed 310
Helix 120	AN3	C	904	917	Right-handed alpha
Helix 121	AN4	C	924	954	Right-handed alpha
Helix 122	AN5	C	959	971	Right-handed alpha
Helix 123	AN6	C	972	991	Right-handed alpha
Helix 124	AN7	C	999	1017	Right-handed alpha
Helix 125	AN8	C	1018	1020	Right-handed 310
Helix 126	AN9	C	1021	1033	Right-handed alpha

There are 26 sheets in PDB entry 9V5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	815	819	anti-parallel
Strand 6	A	822	823	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	177	first strand
Strand 2	A	287	292	anti-parallel
Strand 3	A	138	144	anti-parallel
Strand 4	A	321	324	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	272	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	767	775	parallel
Strand 4	A	758	764	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	232	235	anti-parallel
Strand 3	B	724	731	parallel
Strand 4	B	805	812	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	259	261	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	278	281	anti-parallel
Strand 3	A	608	613	anti-parallel
Strand 4	A	624	630	anti-parallel
Strand 5	A	571	577	anti-parallel
Strand 6	A	662	664	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	682	first strand
Strand 2	A	827	828	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	714	first strand
Strand 2	A	830	831	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	805	812	first strand
Strand 2	A	724	731	anti-parallel
Strand 3	C	232	235	parallel
Strand 4	C	217	219	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	792	first strand
Strand 2	A	798	800	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	815	819	anti-parallel
Strand 6	B	822	826	anti-parallel
Strand 7	B	682	686	anti-parallel
Strand 8	B	855	859	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	289	293	anti-parallel
Strand 3	B	138	144	anti-parallel
Strand 4	B	321	327	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	272	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	768	775	parallel
Strand 4	B	757	763	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	219	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	C	726	731	parallel
Strand 4	C	805	810	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	252	first strand
Strand 2	B	260	261	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	286	first strand
Strand 2	B	278	281	anti-parallel
Strand 3	B	606	613	anti-parallel
Strand 4	B	624	631	anti-parallel
Strand 5	B	571	577	anti-parallel
Strand 6	B	662	667	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	680	first strand
Strand 2	B	829	831	anti-parallel
Strand 3	B	713	714	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	792	first strand
Strand 2	B	798	800	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	815	818	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	287	293	anti-parallel
Strand 3	C	136	143	anti-parallel
Strand 4	C	322	327	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	272	first strand
Strand 2	C	182	188	anti-parallel
Strand 3	C	767	775	parallel
Strand 4	C	757	764	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	253	first strand
Strand 2	C	259	261	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	C	278	281	anti-parallel
Strand 3	C	606	613	anti-parallel
Strand 4	C	624	631	anti-parallel
Strand 5	C	576	577	anti-parallel
Strand 6	C	662	663	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	C	278	281	anti-parallel
Strand 3	C	606	613	anti-parallel
Strand 4	C	624	631	anti-parallel
Strand 5	C	571	573	anti-parallel
Strand 6	C	666	667	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	824	827	first strand
Strand 2	C	682	685	anti-parallel
Strand 3	C	856	859	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	790	792	first strand
Strand 2	C	798	800	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V5R

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V5R