Analysis of interatomic Contacts of Structural Units in PDB entry:
9V67

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V67 entry

There are 4 chains in PDB entry 9V67 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	VAL 524
B	ALA 2	VAL 524
C	ALA 2	VAL 524
D	ALA 2	VAL 524

There are109 helices in PDB entry 9V67. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	15	Right-handed alpha
Helix 2	AA2	A	28	33	Right-handed alpha
Helix 3	AA3	A	46	62	Right-handed alpha
Helix 4	AA4	A	71	78	Right-handed alpha
Helix 5	AA5	A	78	88	Right-handed alpha
Helix 6	AA6	A	100	104	Right-handed 310
Helix 7	AA7	A	114	118	Right-handed 310
Helix 8	AA8	A	131	133	Right-handed 310
Helix 9	AA9	A	134	148	Right-handed alpha
Helix 10	AB1	A	161	163	Right-handed 310
Helix 11	AB2	A	168	175	Right-handed 310
Helix 12	AB3	A	186	200	Right-handed alpha
Helix 13	AB4	A	208	214	Right-handed alpha
Helix 14	AB5	A	216	228	Right-handed alpha
Helix 15	AB6	A	256	265	Right-handed alpha
Helix 16	AB7	A	301	308	Right-handed alpha
Helix 17	AB8	A	317	329	Right-handed alpha
Helix 18	AB9	A	354	366	Right-handed alpha
Helix 19	AC1	A	376	378	Right-handed 310
Helix 20	AC2	A	379	387	Right-handed alpha
Helix 21	AC3	A	405	417	Right-handed alpha
Helix 22	AC4	A	429	433	Right-handed 310
Helix 23	AC5	A	434	436	Right-handed 310
Helix 24	AC6	A	437	444	Right-handed alpha
Helix 25	AC7	A	458	469	Right-handed alpha
Helix 26	AC8	A	482	490	Right-handed alpha
Helix 27	AC9	A	499	512	Right-handed alpha
Helix 28	AD1	B	3	15	Right-handed alpha
Helix 29	AD2	B	25	27	Right-handed 310
Helix 30	AD3	B	28	33	Right-handed alpha
Helix 31	AD4	B	46	62	Right-handed alpha
Helix 32	AD5	B	71	78	Right-handed alpha
Helix 33	AD6	B	78	88	Right-handed alpha
Helix 34	AD7	B	100	104	Right-handed 310
Helix 35	AD8	B	114	118	Right-handed 310
Helix 36	AD9	B	131	133	Right-handed 310
Helix 37	AE1	B	134	148	Right-handed alpha
Helix 38	AE2	B	161	163	Right-handed 310
Helix 39	AE3	B	168	175	Right-handed 310
Helix 40	AE4	B	186	200	Right-handed alpha
Helix 41	AE5	B	208	214	Right-handed alpha
Helix 42	AE6	B	216	228	Right-handed alpha
Helix 43	AE7	B	256	264	Right-handed alpha
Helix 44	AE8	B	301	308	Right-handed alpha
Helix 45	AE9	B	317	329	Right-handed alpha
Helix 46	AF1	B	354	366	Right-handed alpha
Helix 47	AF2	B	376	378	Right-handed 310
Helix 48	AF3	B	379	387	Right-handed alpha
Helix 49	AF4	B	405	417	Right-handed alpha
Helix 50	AF5	B	429	433	Right-handed 310
Helix 51	AF6	B	434	436	Right-handed 310
Helix 52	AF7	B	437	444	Right-handed alpha
Helix 53	AF8	B	482	490	Right-handed alpha
Helix 54	AF9	B	499	513	Right-handed alpha
Helix 55	AG1	C	3	15	Right-handed alpha
Helix 56	AG2	C	25	27	Right-handed 310
Helix 57	AG3	C	28	33	Right-handed alpha
Helix 58	AG4	C	46	62	Right-handed alpha
Helix 59	AG5	C	71	78	Right-handed alpha
Helix 60	AG6	C	78	88	Right-handed alpha
Helix 61	AG7	C	100	104	Right-handed 310
Helix 62	AG8	C	114	118	Right-handed 310
Helix 63	AG9	C	131	133	Right-handed 310
Helix 64	AH1	C	134	148	Right-handed alpha
Helix 65	AH2	C	161	163	Right-handed 310
Helix 66	AH3	C	168	175	Right-handed 310
Helix 67	AH4	C	186	199	Right-handed alpha
Helix 68	AH5	C	208	214	Right-handed alpha
Helix 69	AH6	C	216	228	Right-handed alpha
Helix 70	AH7	C	256	264	Right-handed alpha
Helix 71	AH8	C	301	308	Right-handed alpha
Helix 72	AH9	C	317	329	Right-handed alpha
Helix 73	AI1	C	354	366	Right-handed alpha
Helix 74	AI2	C	376	378	Right-handed 310
Helix 75	AI3	C	379	387	Right-handed alpha
Helix 76	AI4	C	405	417	Right-handed alpha
Helix 77	AI5	C	429	433	Right-handed 310
Helix 78	AI6	C	434	436	Right-handed 310
Helix 79	AI7	C	437	444	Right-handed alpha
Helix 80	AI8	C	482	490	Right-handed alpha
Helix 81	AI9	C	499	512	Right-handed alpha
Helix 82	AJ1	D	3	15	Right-handed alpha
Helix 83	AJ2	D	25	27	Right-handed 310
Helix 84	AJ3	D	28	33	Right-handed alpha
Helix 85	AJ4	D	46	62	Right-handed alpha
Helix 86	AJ5	D	70	78	Right-handed alpha
Helix 87	AJ6	D	78	88	Right-handed alpha
Helix 88	AJ7	D	100	104	Right-handed 310
Helix 89	AJ8	D	114	118	Right-handed 310
Helix 90	AJ9	D	131	133	Right-handed 310
Helix 91	AK1	D	134	148	Right-handed alpha
Helix 92	AK2	D	161	163	Right-handed 310
Helix 93	AK3	D	168	175	Right-handed 310
Helix 94	AK4	D	186	199	Right-handed alpha
Helix 95	AK5	D	208	214	Right-handed alpha
Helix 96	AK6	D	216	228	Right-handed alpha
Helix 97	AK7	D	256	264	Right-handed alpha
Helix 98	AK8	D	301	308	Right-handed alpha
Helix 99	AK9	D	317	329	Right-handed alpha
Helix 100	AL1	D	354	366	Right-handed alpha
Helix 101	AL2	D	376	378	Right-handed 310
Helix 102	AL3	D	379	387	Right-handed alpha
Helix 103	AL4	D	405	417	Right-handed alpha
Helix 104	AL5	D	429	433	Right-handed 310
Helix 105	AL6	D	434	436	Right-handed 310
Helix 106	AL7	D	437	444	Right-handed alpha
Helix 107	AL8	D	458	468	Right-handed alpha
Helix 108	AL9	D	482	490	Right-handed alpha
Helix 109	AM1	D	499	513	Right-handed alpha

There are 14 sheets in PDB entry 9V67. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	19	22	parallel
Strand 3	A	65	70	parallel
Strand 4	A	92	98	parallel
Strand 5	A	154	159	parallel
Strand 6	A	125	127	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	B	312	315	parallel
Strand 3	B	294	299	parallel
Strand 4	B	269	273	parallel
Strand 5	B	204	207	parallel
Strand 6	B	231	233	parallel
Strand 7	B	249	252	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	B	183	185	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	252	first strand
Strand 2	A	231	233	parallel
Strand 3	A	204	207	parallel
Strand 4	A	269	273	parallel
Strand 5	A	294	299	parallel
Strand 6	A	312	315	parallel
Strand 7	B	179	180	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	371	375	parallel
Strand 3	A	422	427	parallel
Strand 4	A	449	454	parallel
Strand 5	A	517	522	parallel
Strand 6	A	493	497	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	43	first strand
Strand 2	B	19	22	parallel
Strand 3	B	65	70	parallel
Strand 4	B	92	98	parallel
Strand 5	B	154	159	parallel
Strand 6	B	125	127	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	371	375	parallel
Strand 3	B	422	427	parallel
Strand 4	B	449	454	parallel
Strand 5	B	517	522	parallel
Strand 6	B	493	497	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	43	first strand
Strand 2	C	19	22	parallel
Strand 3	C	65	70	parallel
Strand 4	C	92	98	parallel
Strand 5	C	154	159	parallel
Strand 6	C	125	127	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	D	312	315	parallel
Strand 3	D	294	299	parallel
Strand 4	D	269	273	parallel
Strand 5	D	203	207	parallel
Strand 6	D	231	233	parallel
Strand 7	D	249	252	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	D	183	185	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	252	first strand
Strand 2	C	231	233	parallel
Strand 3	C	204	207	parallel
Strand 4	C	269	273	parallel
Strand 5	C	294	299	parallel
Strand 6	C	312	315	parallel
Strand 7	D	179	180	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	397	first strand
Strand 2	C	371	375	parallel
Strand 3	C	422	427	parallel
Strand 4	C	449	454	parallel
Strand 5	C	517	522	parallel
Strand 6	C	493	497	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	43	first strand
Strand 2	D	19	22	parallel
Strand 3	D	65	69	parallel
Strand 4	D	92	98	parallel
Strand 5	D	154	159	parallel
Strand 6	D	125	127	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	397	first strand
Strand 2	D	371	375	parallel
Strand 3	D	422	427	parallel
Strand 4	D	449	454	parallel
Strand 5	D	517	522	parallel
Strand 6	D	493	497	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V67

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V67