Analysis of interatomic Contacts of Structural Units in PDB entry:
9V6N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V6N entry

There are 2 chains in PDB entry 9V6N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 156	CYS 567
B	CYS 691	GLY 1138

There are 14 helices in PDB entry 9V6N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	156	160	Right-handed 310
Helix 2	AA2	A	188	193	Right-handed alpha
Helix 3	AA3	A	194	196	Right-handed 310
Helix 4	AA4	A	200	206	Right-handed alpha
Helix 5	AA5	A	211	218	Right-handed alpha
Helix 6	AA6	A	368	370	Right-handed 310
Helix 7	AA7	A	416	423	Right-handed alpha
Helix 8	AA8	A	529	534	Right-handed alpha
Helix 9	AA9	A	560	566	Right-handed alpha
Helix 10	AB1	B	694	698	Right-handed 310
Helix 11	AB2	B	784	791	Right-handed alpha
Helix 12	AB3	B	936	943	Right-handed alpha
Helix 13	AB4	B	971	979	Right-handed alpha
Helix 14	AB5	B	1021	1025	Right-handed 310

There are 16 sheets in PDB entry 9V6N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	270	first strand
Strand 2	A	256	260	anti-parallel
Strand 3	A	297	298	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	284	286	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	304	first strand
Strand 2	A	456	466	anti-parallel
Strand 3	A	321	324	anti-parallel
Strand 4	A	327	328	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	304	first strand
Strand 2	A	456	466	anti-parallel
Strand 3	A	337	347	anti-parallel
Strand 4	A	353	355	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	452	first strand
Strand 2	A	442	447	anti-parallel
Strand 3	A	361	364	anti-parallel
Strand 4	B	767	776	parallel
Strand 5	B	832	841	anti-parallel
Strand 6	B	810	816	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	372	377	anti-parallel
Strand 3	A	432	436	anti-parallel
Strand 4	A	413	415	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	486	first strand
Strand 2	A	491	495	anti-parallel
Strand 3	A	521	524	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	551	556	first strand
Strand 2	A	535	543	anti-parallel
Strand 3	A	500	507	anti-parallel
Strand 4	A	510	519	anti-parallel
Strand 5	B	1134	1135	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	720	first strand
Strand 2	B	1012	1014	anti-parallel
Strand 3	B	887	890	anti-parallel
Strand 4	B	879	881	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	730	first strand
Strand 2	B	746	764	anti-parallel
Strand 3	B	847	864	anti-parallel
Strand 4	B	872	875	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	730	first strand
Strand 2	B	746	764	anti-parallel
Strand 3	B	847	864	anti-parallel
Strand 4	B	904	908	anti-parallel
Strand 5	B	912	916	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	735	first strand
Strand 2	B	741	743	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	932	933	first strand
Strand 2	B	948	949	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	955	957	first strand
Strand 2	B	964	966	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1029	1038	first strand
Strand 2	B	1046	1054	anti-parallel
Strand 3	B	1079	1086	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1070	1071	first strand
Strand 2	B	1062	1064	anti-parallel
Strand 3	B	1095	1099	anti-parallel
Strand 4	B	1106	1110	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V6N

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V6N