Analysis of interatomic Contacts of Structural Units in PDB entry:
9V72


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9V72 entry

There are 2 chains in PDB entry 9V72 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 309SER 601
B
 VAL 310SER 600
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9V72. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
314 321Right-handed alpha
Helix 2
AA2
A
325 327Right-handed 310
Helix 3
AA3
A
399 405Right-handed alpha
Helix 4
AA4
A
413 434Right-handed alpha
Helix 5
AA5
A
445 447Right-handed 310
Helix 6
AA6
A
499 516Right-handed alpha
Helix 7
AA7
A
534 543Right-handed alpha
Helix 8
AA8
A
546 553Right-handed alpha
Helix 9
AA9
A
554 555Right-handed 310
Helix 10
AB1
A
556 560Right-handed 310
Helix 11
AB2
A
564 579Right-handed alpha
Helix 12
AB3
A
588 599Right-handed alpha
Helix 13
AB4
B
313 321Right-handed alpha
Helix 14
AB5
B
325 329Right-handed 310
Helix 15
AB6
B
399 406Right-handed alpha
Helix 16
AB7
B
413 434Right-handed alpha
Helix 17
AB8
B
445 447Right-handed 310
Helix 18
AB9
B
489 494Right-handed alpha
Helix 19
AC1
B
499 517Right-handed alpha
Helix 20
AC2
B
533 541Right-handed alpha
Helix 21
AC3
B
548 553Right-handed alpha
Helix 22
AC4
B
566 578Right-handed alpha
Helix 23
AC5
B
582 586Right-handed 310
Helix 24
AC6
B
588 599Right-handed alpha
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There are 5 sheets in PDB entry 9V72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
379 383parallel
Strand 3
A
389 393anti-parallel
Strand 4
A
346 352anti-parallel
Strand 5
A
337 343anti-parallel
Strand 6
A
329 332anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 451first strand
Strand 2
A
457 459anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
532 533anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 343first strand
Strand 2
B
346 352anti-parallel
Strand 3
B
389 393anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
449 451first strand
Strand 2
B
457 459anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il