Analysis of interatomic Contacts of Structural Units in PDB entry:
9V7K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V7K entry

There are 22 chains in PDB entry 9V7K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	ASP 946	THR 1154
Z	SER 314	GLU 339
A	SER 2	GLN 161
B	MET 1	GLY 70
B	MET 72	SER 161
C	SER 2	MET 160
D	MET 1	GLY 70
D	MET 72	SER 161
E	SER 2	GLN 161
F	MET 1	GLY 70
F	MET 72	SER 161
G	SER 2	GLN 161
H	MET 1	GLY 70
H	MET 72	SER 161
I	SER 2	GLN 161
J	MET 1	GLY 70
J	MET 72	SER 161
K	SER 2	GLN 161
L	MET 1	GLY 70
L	MET 72	SER 161
M	SER 2	VAL 67
X	ILE 12	MET 60

There are117 helices in PDB entry 9V7K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	950	957	Right-handed alpha
Helix 2	AA2	1	989	1005	Right-handed alpha
Helix 3	AA3	1	1018	1027	Right-handed alpha
Helix 4	AA4	1	1031	1042	Right-handed alpha
Helix 5	AA5	1	1042	1049	Right-handed alpha
Helix 6	AA6	1	1054	1066	Right-handed alpha
Helix 7	AA7	1	1073	1087	Right-handed alpha
Helix 8	AA8	1	1089	1099	Right-handed alpha
Helix 9	AA9	1	1099	1106	Right-handed alpha
Helix 10	AB1	1	1122	1133	Right-handed alpha
Helix 11	AB2	Z	315	329	Right-handed alpha
Helix 12	AB3	A	3	15	Right-handed alpha
Helix 13	AB4	A	19	46	Right-handed alpha
Helix 14	AB5	A	46	62	Right-handed alpha
Helix 15	AB6	A	63	67	Right-handed 310
Helix 16	AB7	A	74	99	Right-handed alpha
Helix 17	AB8	A	101	109	Right-handed alpha
Helix 18	AB9	A	111	120	Right-handed alpha
Helix 19	AC1	A	122	141	Right-handed alpha
Helix 20	AC2	A	142	160	Right-handed alpha
Helix 21	AC3	B	3	16	Right-handed alpha
Helix 22	AC4	B	20	47	Right-handed alpha
Helix 23	AC5	B	47	59	Right-handed alpha
Helix 24	AC6	B	74	99	Right-handed alpha
Helix 25	AC7	B	101	107	Right-handed alpha
Helix 26	AC8	B	111	120	Right-handed alpha
Helix 27	AC9	B	122	142	Right-handed alpha
Helix 28	AD1	B	142	161	Right-handed alpha
Helix 29	AD2	C	3	14	Right-handed alpha
Helix 30	AD3	C	19	32	Right-handed alpha
Helix 31	AD4	C	32	46	Right-handed alpha
Helix 32	AD5	C	46	62	Right-handed alpha
Helix 33	AD6	C	63	67	Right-handed 310
Helix 34	AD7	C	74	99	Right-handed alpha
Helix 35	AD8	C	101	109	Right-handed alpha
Helix 36	AD9	C	111	120	Right-handed alpha
Helix 37	AE1	C	122	139	Right-handed alpha
Helix 38	AE2	C	142	160	Right-handed alpha
Helix 39	AE3	D	3	16	Right-handed alpha
Helix 40	AE4	D	20	47	Right-handed alpha
Helix 41	AE5	D	47	59	Right-handed alpha
Helix 42	AE6	D	74	99	Right-handed alpha
Helix 43	AE7	D	101	108	Right-handed alpha
Helix 44	AE8	D	111	120	Right-handed alpha
Helix 45	AE9	D	122	142	Right-handed alpha
Helix 46	AF1	D	142	161	Right-handed alpha
Helix 47	AF2	E	3	15	Right-handed alpha
Helix 48	AF3	E	19	46	Right-handed alpha
Helix 49	AF4	E	46	62	Right-handed alpha
Helix 50	AF5	E	63	67	Right-handed 310
Helix 51	AF6	E	74	99	Right-handed alpha
Helix 52	AF7	E	101	109	Right-handed alpha
Helix 53	AF8	E	111	120	Right-handed alpha
Helix 54	AF9	E	122	141	Right-handed alpha
Helix 55	AG1	E	142	160	Right-handed alpha
Helix 56	AG2	F	3	16	Right-handed alpha
Helix 57	AG3	F	20	47	Right-handed alpha
Helix 58	AG4	F	47	60	Right-handed alpha
Helix 59	AG5	F	74	99	Right-handed alpha
Helix 60	AG6	F	101	108	Right-handed alpha
Helix 61	AG7	F	111	120	Right-handed alpha
Helix 62	AG8	F	122	142	Right-handed alpha
Helix 63	AG9	F	142	161	Right-handed alpha
Helix 64	AH1	G	3	15	Right-handed alpha
Helix 65	AH2	G	19	46	Right-handed alpha
Helix 66	AH3	G	46	62	Right-handed alpha
Helix 67	AH4	G	63	67	Right-handed 310
Helix 68	AH5	G	74	99	Right-handed alpha
Helix 69	AH6	G	101	109	Right-handed alpha
Helix 70	AH7	G	111	120	Right-handed alpha
Helix 71	AH8	G	122	141	Right-handed alpha
Helix 72	AH9	G	142	160	Right-handed alpha
Helix 73	AI1	H	3	16	Right-handed alpha
Helix 74	AI2	H	20	47	Right-handed alpha
Helix 75	AI3	H	47	59	Right-handed alpha
Helix 76	AI4	H	74	99	Right-handed alpha
Helix 77	AI5	H	101	108	Right-handed alpha
Helix 78	AI6	H	111	120	Right-handed alpha
Helix 79	AI7	H	122	142	Right-handed alpha
Helix 80	AI8	H	142	161	Right-handed alpha
Helix 81	AI9	I	3	15	Right-handed alpha
Helix 82	AJ1	I	19	46	Right-handed alpha
Helix 83	AJ2	I	46	62	Right-handed alpha
Helix 84	AJ3	I	63	67	Right-handed 310
Helix 85	AJ4	I	74	99	Right-handed alpha
Helix 86	AJ5	I	101	109	Right-handed alpha
Helix 87	AJ6	I	111	120	Right-handed alpha
Helix 88	AJ7	I	122	141	Right-handed alpha
Helix 89	AJ8	I	142	160	Right-handed alpha
Helix 90	AJ9	J	3	16	Right-handed alpha
Helix 91	AK1	J	20	47	Right-handed alpha
Helix 92	AK2	J	47	59	Right-handed alpha
Helix 93	AK3	J	74	99	Right-handed alpha
Helix 94	AK4	J	101	108	Right-handed alpha
Helix 95	AK5	J	111	120	Right-handed alpha
Helix 96	AK6	J	122	142	Right-handed alpha
Helix 97	AK7	J	142	161	Right-handed alpha
Helix 98	AK8	K	3	15	Right-handed alpha
Helix 99	AK9	K	19	46	Right-handed alpha
Helix 100	AL1	K	46	62	Right-handed alpha
Helix 101	AL2	K	63	67	Right-handed 310
Helix 102	AL3	K	74	99	Right-handed alpha
Helix 103	AL4	K	101	109	Right-handed alpha
Helix 104	AL5	K	111	120	Right-handed alpha
Helix 105	AL6	K	122	141	Right-handed alpha
Helix 106	AL7	K	142	160	Right-handed alpha
Helix 107	AL8	L	3	16	Right-handed alpha
Helix 108	AL9	L	20	47	Right-handed alpha
Helix 109	AM1	L	47	59	Right-handed alpha
Helix 110	AM2	L	74	99	Right-handed alpha
Helix 111	AM3	L	101	108	Right-handed alpha
Helix 112	AM4	L	111	120	Right-handed alpha
Helix 113	AM5	L	122	142	Right-handed alpha
Helix 114	AM6	L	142	161	Right-handed alpha
Helix 115	AM7	M	22	27	Right-handed alpha
Helix 116	AM8	M	34	47	Right-handed alpha
Helix 117	AM9	X	48	53	Right-handed 310

There is 1 sheet (AA1) in PDB entry 9V7K.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	30	33	first strand
Strand 2	M	4	10	anti-parallel
Strand 3	M	50	58	anti-parallel

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V7K

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V7K