Analysis of interatomic Contacts of Structural Units in PDB entry:
9V7R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V7R entry

There are 2 chains in PDB entry 9V7R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 33	VAL 344
G	ASN 33	VAL 344

There are 23 helices in PDB entry 9V7R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	58	Right-handed alpha
Helix 2	AA2	A	69	85	Right-handed alpha
Helix 3	AA3	A	87	92	Right-handed alpha
Helix 4	AA4	A	93	95	Right-handed 310
Helix 5	AA5	A	140	145	Right-handed alpha
Helix 6	AA6	A	153	181	Right-handed alpha
Helix 7	AA7	A	189	193	Right-handed 310
Helix 8	AA8	A	238	241	Right-handed 310
Helix 9	AA9	A	258	265	Right-handed alpha
Helix 10	AB1	A	302	306	Right-handed 310
Helix 11	AB2	A	319	329	Right-handed alpha
Helix 12	AB3	A	337	341	Right-handed 310
Helix 13	AB4	G	43	58	Right-handed alpha
Helix 14	AB5	G	69	85	Right-handed alpha
Helix 15	AB6	G	87	92	Right-handed alpha
Helix 16	AB7	G	93	95	Right-handed 310
Helix 17	AB8	G	140	145	Right-handed alpha
Helix 18	AB9	G	153	181	Right-handed alpha
Helix 19	AC1	G	189	193	Right-handed 310
Helix 20	AC2	G	258	265	Right-handed alpha
Helix 21	AC3	G	302	306	Right-handed 310
Helix 22	AC4	G	319	329	Right-handed alpha
Helix 23	AC5	G	337	341	Right-handed 310

There are 6 sheets in PDB entry 9V7R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	60	64	parallel
Strand 3	A	253	257	anti-parallel
Strand 4	A	223	227	anti-parallel
Strand 5	A	284	292	anti-parallel
Strand 6	A	194	202	anti-parallel
Strand 7	A	125	135	anti-parallel
Strand 8	A	112	119	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	245	first strand
Strand 2	A	233	237	anti-parallel
Strand 3	A	274	276	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	299	first strand
Strand 2	A	317	318	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	39	first strand
Strand 2	G	60	64	parallel
Strand 3	G	253	257	anti-parallel
Strand 4	G	223	227	anti-parallel
Strand 5	G	284	292	anti-parallel
Strand 6	G	194	202	anti-parallel
Strand 7	G	130	135	anti-parallel
Strand 8	G	112	115	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	217	218	first strand
Strand 2	G	273	276	anti-parallel
Strand 3	G	233	237	anti-parallel
Strand 4	G	242	245	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	298	299	first strand
Strand 2	G	317	318	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V7R

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V7R