Analysis of interatomic Contacts of Structural Units in PDB entry:
9V7S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V7S entry

There are 6 chains in PDB entry 9V7S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	ARG 760
B	T 1	T 18
C	A 1	C 15
a	LYS 4	ARG 758
b	T 1	A 17
c	A 1	C 15

There are 43 helices in PDB entry 9V7S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	54	Right-handed alpha
Helix 2	AA2	A	109	130	Right-handed alpha
Helix 3	AA3	A	190	194	Right-handed 310
Helix 4	AA4	A	195	202	Right-handed alpha
Helix 5	AA5	A	203	208	Right-handed alpha
Helix 6	AA6	A	254	262	Right-handed alpha
Helix 7	AA7	A	299	304	Right-handed alpha
Helix 8	AA8	A	312	325	Right-handed alpha
Helix 9	AA9	A	360	362	Right-handed 310
Helix 10	AB1	A	372	392	Right-handed alpha
Helix 11	AB2	A	411	431	Right-handed alpha
Helix 12	AB3	A	451	464	Right-handed alpha
Helix 13	AB4	A	482	491	Right-handed alpha
Helix 14	AB5	A	501	510	Right-handed alpha
Helix 15	AB6	A	516	530	Right-handed alpha
Helix 16	AB7	A	587	606	Right-handed alpha
Helix 17	AB8	A	621	639	Right-handed alpha
Helix 18	AB9	A	697	703	Right-handed alpha
Helix 19	AC1	A	723	735	Right-handed alpha
Helix 20	AC2	A	749	753	Right-handed 310
Helix 21	AC3	a	37	54	Right-handed alpha
Helix 22	AC4	a	104	108	Right-handed 310
Helix 23	AC5	a	109	130	Right-handed alpha
Helix 24	AC6	a	190	194	Right-handed 310
Helix 25	AC7	a	195	202	Right-handed alpha
Helix 26	AC8	a	203	208	Right-handed alpha
Helix 27	AC9	a	212	216	Right-handed 310
Helix 28	AD1	a	254	262	Right-handed alpha
Helix 29	AD2	a	299	304	Right-handed alpha
Helix 30	AD3	a	312	325	Right-handed alpha
Helix 31	AD4	a	360	362	Right-handed 310
Helix 32	AD5	a	372	392	Right-handed alpha
Helix 33	AD6	a	411	431	Right-handed alpha
Helix 34	AD7	a	447	450	Right-handed 310
Helix 35	AD8	a	451	464	Right-handed alpha
Helix 36	AD9	a	482	491	Right-handed alpha
Helix 37	AE1	a	501	510	Right-handed alpha
Helix 38	AE2	a	516	530	Right-handed alpha
Helix 39	AE3	a	587	606	Right-handed alpha
Helix 40	AE4	a	621	639	Right-handed alpha
Helix 41	AE5	a	697	703	Right-handed alpha
Helix 42	AE6	a	723	735	Right-handed alpha
Helix 43	AE7	a	749	753	Right-handed 310

There are 17 sheets in PDB entry 9V7S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	346	first strand
Strand 2	A	5	8	anti-parallel
Strand 3	A	661	664	anti-parallel
Strand 4	A	672	673	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	139	first strand
Strand 2	A	142	145	anti-parallel
Strand 3	A	159	170	anti-parallel
Strand 4	A	175	186	anti-parallel
Strand 5	A	10	14	anti-parallel
Strand 6	A	335	339	anti-parallel
Strand 7	A	330	332	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	67	71	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	90	103	anti-parallel
Strand 5	A	81	86	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	287	first strand
Strand 2	A	271	277	anti-parallel
Strand 3	A	227	239	anti-parallel
Strand 4	A	219	222	anti-parallel
Strand 5	A	291	293	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	247	first strand
Strand 2	A	250	253	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	357	358	anti-parallel
Strand 3	A	536	537	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	442	first strand
Strand 2	A	401	407	parallel
Strand 3	A	469	475	parallel
Strand 4	A	497	500	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	568	574	first strand
Strand 2	A	555	562	anti-parallel
Strand 3	A	545	552	anti-parallel
Strand 4	A	611	617	parallel
Strand 5	A	646	653	parallel
Strand 6	A	709	715	anti-parallel
Strand 7	A	687	691	anti-parallel
Strand 8	A	679	682	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	344	346	first strand
Strand 2	a	5	8	anti-parallel
Strand 3	a	661	664	anti-parallel
Strand 4	a	672	673	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	135	139	first strand
Strand 2	a	142	145	anti-parallel
Strand 3	a	158	171	anti-parallel
Strand 4	a	174	187	anti-parallel
Strand 5	a	10	14	anti-parallel
Strand 6	a	338	339	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	58	60	first strand
Strand 2	a	67	70	anti-parallel
Strand 3	a	24	28	anti-parallel
Strand 4	a	90	100	anti-parallel
Strand 5	a	81	86	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	283	287	first strand
Strand 2	a	271	277	anti-parallel
Strand 3	a	227	239	anti-parallel
Strand 4	a	219	222	anti-parallel
Strand 5	a	291	293	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	244	247	first strand
Strand 2	a	250	253	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	331	332	first strand
Strand 2	a	335	336	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	364	365	first strand
Strand 2	a	357	358	anti-parallel
Strand 3	a	536	537	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	436	442	first strand
Strand 2	a	401	407	parallel
Strand 3	a	469	475	parallel
Strand 4	a	497	500	parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	568	575	first strand
Strand 2	a	555	562	anti-parallel
Strand 3	a	545	552	anti-parallel
Strand 4	a	611	617	parallel
Strand 5	a	646	653	parallel
Strand 6	a	709	715	anti-parallel
Strand 7	a	687	691	anti-parallel
Strand 8	a	679	684	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V7S

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V7S