Analysis of interatomic Contacts of Structural Units in PDB entry:
9V7U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V7U entry

There are 24 chains in PDB entry 9V7U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 11	GLY 751
B	LYS 4	GLY 734
C	SER 2	TYR 81
D	ALA 1	ALA 186
E	ALA 1	ALA 63
F	ALA 1	ALA 168
J	MET 1	LEU 37
M	MET 1	GLN 31
a	ARG 1	ALA 166
b	TRP 1	GLY 169
c	LEU 1	LEU 221
d	GLY 1	ALA 220
e	ARG 1	THR 199
h	ARG 1	GLY 174
i	ARG 1	ALA 177
j	GLU 1	PRO 183
k	ARG 1	THR 172
l	HIS 1	VAL 167
m	HIS 1	GLY 168
f	ARG 1	TRP 174
g	ARG 1	TRP 178
n	THR 1	ALA 184
o	ASP 1	PRO 164
p	PRO 7	LEU 154

There are203 helices in PDB entry 9V7U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	42	Right-handed 310
Helix 2	AA2	A	46	55	Right-handed alpha
Helix 3	AA3	A	58	63	Right-handed alpha
Helix 4	AA4	A	65	98	Right-handed alpha
Helix 5	AA5	A	100	107	Right-handed alpha
Helix 6	AA6	A	123	128	Right-handed 310
Helix 7	AA7	A	143	152	Right-handed alpha
Helix 8	AA8	A	155	183	Right-handed alpha
Helix 9	AA9	A	187	192	Right-handed alpha
Helix 10	AB1	A	193	203	Right-handed alpha
Helix 11	AB2	A	203	220	Right-handed alpha
Helix 12	AB3	A	220	231	Right-handed alpha
Helix 13	AB4	A	233	237	Right-handed 310
Helix 14	AB5	A	241	246	Right-handed alpha
Helix 15	AB6	A	246	254	Right-handed alpha
Helix 16	AB7	A	255	260	Right-handed 310
Helix 17	AB8	A	261	266	Right-handed alpha
Helix 18	AB9	A	268	275	Right-handed 310
Helix 19	AC1	A	290	309	Right-handed alpha
Helix 20	AC2	A	321	328	Right-handed alpha
Helix 21	AC3	A	340	348	Right-handed alpha
Helix 22	AC4	A	348	374	Right-handed alpha
Helix 23	AC5	A	383	416	Right-handed alpha
Helix 24	AC6	A	418	422	Right-handed 310
Helix 25	AC7	A	425	433	Right-handed alpha
Helix 26	AC8	A	433	465	Right-handed alpha
Helix 27	AC9	A	467	471	Right-handed 310
Helix 28	AD1	A	481	493	Right-handed alpha
Helix 29	AD2	A	494	497	Right-handed 310
Helix 30	AD3	A	507	511	Right-handed 310
Helix 31	AD4	A	529	556	Right-handed alpha
Helix 32	AD5	A	565	570	Right-handed alpha
Helix 33	AD6	A	587	618	Right-handed alpha
Helix 34	AD7	A	634	639	Right-handed alpha
Helix 35	AD8	A	641	649	Right-handed alpha
Helix 36	AD9	A	649	654	Right-handed alpha
Helix 37	AE1	A	654	659	Right-handed alpha
Helix 38	AE2	A	665	688	Right-handed alpha
Helix 39	AE3	A	689	707	Right-handed alpha
Helix 40	AE4	A	719	751	Right-handed alpha
Helix 41	AE5	B	9	14	Right-handed alpha
Helix 42	AE6	B	18	27	Right-handed alpha
Helix 43	AE7	B	30	34	Right-handed 310
Helix 44	AE8	B	38	72	Right-handed alpha
Helix 45	AE9	B	73	79	Right-handed alpha
Helix 46	AF1	B	97	104	Right-handed alpha
Helix 47	AF2	B	119	127	Right-handed alpha
Helix 48	AF3	B	131	157	Right-handed alpha
Helix 49	AF4	B	158	162	Right-handed 310
Helix 50	AF5	B	164	169	Right-handed alpha
Helix 51	AF6	B	170	197	Right-handed alpha
Helix 52	AF7	B	197	202	Right-handed alpha
Helix 53	AF8	B	222	228	Right-handed alpha
Helix 54	AF9	B	229	234	Right-handed 310
Helix 55	AG1	B	269	288	Right-handed alpha
Helix 56	AG2	B	300	308	Right-handed alpha
Helix 57	AG3	B	321	328	Right-handed alpha
Helix 58	AG4	B	329	355	Right-handed alpha
Helix 59	AG5	B	364	397	Right-handed alpha
Helix 60	AG6	B	406	414	Right-handed alpha
Helix 61	AG7	B	414	446	Right-handed alpha
Helix 62	AG8	B	448	452	Right-handed 310
Helix 63	AG9	B	457	467	Right-handed alpha
Helix 64	AH1	B	469	473	Right-handed 310
Helix 65	AH2	B	476	480	Right-handed 310
Helix 66	AH3	B	493	502	Right-handed alpha
Helix 67	AH4	B	513	540	Right-handed alpha
Helix 68	AH5	B	549	554	Right-handed 310
Helix 69	AH6	B	562	566	Right-handed 310
Helix 70	AH7	B	571	603	Right-handed alpha
Helix 71	AH8	B	605	613	Right-handed alpha
Helix 72	AH9	B	615	623	Right-handed alpha
Helix 73	AI1	B	625	629	Right-handed 310
Helix 74	AI2	B	643	666	Right-handed alpha
Helix 75	AI3	B	669	685	Right-handed alpha
Helix 76	AI4	B	687	691	Right-handed 310
Helix 77	AI5	B	701	733	Right-handed alpha
Helix 78	AI6	C	15	21	Right-handed alpha
Helix 79	AI7	C	44	48	Right-handed 310
Helix 80	AI8	C	52	58	Right-handed alpha
Helix 81	AI9	D	5	11	Right-handed alpha
Helix 82	AJ1	D	13	24	Right-handed alpha
Helix 83	AJ2	D	28	38	Right-handed alpha
Helix 84	AJ3	D	39	42	Right-handed 310
Helix 85	AJ4	D	43	50	Right-handed alpha
Helix 86	AJ5	D	59	65	Right-handed alpha
Helix 87	AJ6	D	101	115	Right-handed alpha
Helix 88	AJ7	D	161	165	Right-handed 310
Helix 89	AJ8	D	177	181	Right-handed 310
Helix 90	AJ9	E	56	58	Right-handed 310
Helix 91	AK1	F	13	32	Right-handed alpha
Helix 92	AK2	F	38	61	Right-handed alpha
Helix 93	AK3	F	76	83	Right-handed alpha
Helix 94	AK4	F	85	88	Right-handed 310
Helix 95	AK5	F	89	115	Right-handed alpha
Helix 96	AK6	F	119	126	Right-handed alpha
Helix 97	AK7	F	128	138	Right-handed alpha
Helix 98	AK8	F	141	152	Right-handed alpha
Helix 99	AK9	F	158	162	Right-handed 310
Helix 100	AL1	J	3	9	Right-handed alpha
Helix 101	AL2	J	10	33	Right-handed alpha
Helix 102	AL3	M	4	31	Right-handed alpha
Helix 103	AL4	a	32	63	Right-handed alpha
Helix 104	AL5	a	67	69	Right-handed 310
Helix 105	AL6	a	70	75	Right-handed alpha
Helix 106	AL7	a	76	98	Right-handed alpha
Helix 107	AL8	a	104	110	Right-handed alpha
Helix 108	AL9	a	124	152	Right-handed alpha
Helix 109	AM1	a	155	163	Right-handed alpha
Helix 110	AM2	b	29	60	Right-handed alpha
Helix 111	AM3	b	64	71	Right-handed 310
Helix 112	AM4	b	83	105	Right-handed alpha
Helix 113	AM5	b	128	156	Right-handed alpha
Helix 114	AM6	b	159	168	Right-handed alpha
Helix 115	AM7	c	13	17	Right-handed 310
Helix 116	AM8	c	42	77	Right-handed alpha
Helix 117	AM9	c	85	95	Right-handed 310
Helix 118	AN1	c	102	104	Right-handed 310
Helix 119	AN2	c	112	133	Right-handed alpha
Helix 120	AN3	c	158	190	Right-handed alpha
Helix 121	AN4	c	193	204	Right-handed alpha
Helix 122	AN5	c	209	221	Right-handed alpha
Helix 123	AN6	d	13	17	Right-handed 310
Helix 124	AN7	d	43	78	Right-handed alpha
Helix 125	AN8	d	86	91	Right-handed alpha
Helix 126	AN9	d	92	95	Right-handed 310
Helix 127	AO1	d	103	105	Right-handed 310
Helix 128	AO2	d	113	135	Right-handed alpha
Helix 129	AO3	d	149	153	Right-handed 310
Helix 130	AO4	d	160	192	Right-handed alpha
Helix 131	AO5	d	195	206	Right-handed alpha
Helix 132	AO6	d	215	220	Right-handed alpha
Helix 133	AO7	e	32	66	Right-handed alpha
Helix 134	AO8	e	76	84	Right-handed alpha
Helix 135	AO9	e	89	91	Right-handed 310
Helix 136	AP1	e	99	121	Right-handed alpha
Helix 137	AP2	e	137	141	Right-handed 310
Helix 138	AP3	e	148	176	Right-handed alpha
Helix 139	AP4	e	179	189	Right-handed alpha
Helix 140	AP5	h	32	64	Right-handed alpha
Helix 141	AP6	h	77	98	Right-handed alpha
Helix 142	AP7	h	122	150	Right-handed alpha
Helix 143	AP8	h	153	164	Right-handed alpha
Helix 144	AP9	h	169	173	Right-handed 310
Helix 145	AQ1	i	32	63	Right-handed alpha
Helix 146	AQ2	i	67	75	Right-handed alpha
Helix 147	AQ3	i	78	98	Right-handed alpha
Helix 148	AQ4	i	103	107	Right-handed 310
Helix 149	AQ5	i	118	146	Right-handed alpha
Helix 150	AQ6	i	149	160	Right-handed alpha
Helix 151	AQ7	j	35	66	Right-handed alpha
Helix 152	AQ8	j	70	77	Right-handed 310
Helix 153	AQ9	j	79	101	Right-handed alpha
Helix 154	AR1	j	125	153	Right-handed alpha
Helix 155	AR2	j	156	167	Right-handed alpha
Helix 156	AR3	j	172	178	Right-handed alpha
Helix 157	AR4	k	32	62	Right-handed alpha
Helix 158	AR5	k	76	98	Right-handed alpha
Helix 159	AR6	k	122	150	Right-handed alpha
Helix 160	AR7	k	153	164	Right-handed alpha
Helix 161	AR8	l	34	59	Right-handed alpha
Helix 162	AR9	l	60	65	Right-handed alpha
Helix 163	AS1	l	69	71	Right-handed 310
Helix 164	AS2	l	72	77	Right-handed alpha
Helix 165	AS3	l	78	100	Right-handed alpha
Helix 166	AS4	l	123	152	Right-handed alpha
Helix 167	AS5	l	154	165	Right-handed alpha
Helix 168	AS6	m	34	65	Right-handed alpha
Helix 169	AS7	m	69	76	Right-handed 310
Helix 170	AS8	m	78	100	Right-handed alpha
Helix 171	AS9	m	123	151	Right-handed alpha
Helix 172	AT1	m	156	162	Right-handed alpha
Helix 173	AT2	f	32	63	Right-handed alpha
Helix 174	AT3	f	67	75	Right-handed alpha
Helix 175	AT4	f	77	97	Right-handed alpha
Helix 176	AT5	f	118	146	Right-handed alpha
Helix 177	AT6	f	150	160	Right-handed alpha
Helix 178	AT7	f	165	171	Right-handed alpha
Helix 179	AT8	g	32	64	Right-handed alpha
Helix 180	AT9	g	67	74	Right-handed 310
Helix 181	AU1	g	76	98	Right-handed alpha
Helix 182	AU2	g	122	151	Right-handed alpha
Helix 183	AU3	g	153	164	Right-handed alpha
Helix 184	AU4	g	169	175	Right-handed alpha
Helix 185	AU5	n	23	27	Right-handed 310
Helix 186	AU6	n	30	65	Right-handed alpha
Helix 187	AU7	n	74	81	Right-handed alpha
Helix 188	AU8	n	97	108	Right-handed alpha
Helix 189	AU9	n	108	119	Right-handed alpha
Helix 190	AV1	n	135	139	Right-handed 310
Helix 191	AV2	n	146	175	Right-handed alpha
Helix 192	AV3	n	177	182	Right-handed alpha
Helix 193	AV4	o	33	63	Right-handed alpha
Helix 194	AV5	o	67	74	Right-handed 310
Helix 195	AV6	o	76	98	Right-handed alpha
Helix 196	AV7	o	121	149	Right-handed alpha
Helix 197	AV8	o	152	161	Right-handed alpha
Helix 198	AV9	p	8	12	Right-handed 310
Helix 199	AW1	p	29	56	Right-handed alpha
Helix 200	AW2	p	65	69	Right-handed 310
Helix 201	AW3	p	74	95	Right-handed alpha
Helix 202	AW4	p	118	146	Right-handed alpha
Helix 203	AW5	p	149	154	Right-handed alpha

There are 16 sheets in PDB entry 9V7U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	138	139	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	623	first strand
Strand 2	A	626	629	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	99	first strand
Strand 2	D	67	74	anti-parallel
Strand 3	D	124	128	anti-parallel
Strand 4	D	134	136	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	81	first strand
Strand 2	D	87	90	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	55	first strand
Strand 2	E	38	41	anti-parallel
Strand 3	E	22	28	anti-parallel
Strand 4	E	8	11	anti-parallel
Strand 5	E	60	61	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	9	first strand
Strand 2	F	64	65	anti-parallel
Strand 3	F	71	72	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	99	100	first strand
Strand 2	c	109	110	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	100	101	first strand
Strand 2	d	109	111	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	136	137	first strand
Strand 2	d	140	141	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	86	87	first strand
Strand 2	e	95	97	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V7U

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V7U