Analysis of interatomic Contacts of Structural Units in PDB entry:
9V7V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V7V entry

There are 4 chains in PDB entry 9V7V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 34	SER 332
B	LYS 34	SER 332
C	LYS 34	SER 332
D	LYS 34	SER 332

There are 49 helices in PDB entry 9V7V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	55	Right-handed alpha
Helix 2	AA2	A	67	74	Right-handed alpha
Helix 3	AA3	A	83	88	Right-handed alpha
Helix 4	AA4	A	95	103	Right-handed alpha
Helix 5	AA5	A	106	111	Right-handed alpha
Helix 6	AA6	A	128	144	Right-handed alpha
Helix 7	AA7	A	156	159	Right-handed 310
Helix 8	AA8	A	160	175	Right-handed alpha
Helix 9	AA9	A	186	193	Right-handed alpha
Helix 10	AB1	A	198	220	Right-handed alpha
Helix 11	AB2	A	229	237	Right-handed alpha
Helix 12	AB3	A	254	265	Right-handed alpha
Helix 13	AB4	A	290	304	Right-handed alpha
Helix 14	AB5	B	41	55	Right-handed alpha
Helix 15	AB6	B	67	73	Right-handed alpha
Helix 16	AB7	B	83	88	Right-handed alpha
Helix 17	AB8	B	95	106	Right-handed alpha
Helix 18	AB9	B	106	112	Right-handed alpha
Helix 19	AC1	B	128	133	Right-handed alpha
Helix 20	AC2	B	134	144	Right-handed alpha
Helix 21	AC3	B	160	178	Right-handed alpha
Helix 22	AC4	B	185	191	Right-handed alpha
Helix 23	AC5	B	197	221	Right-handed alpha
Helix 24	AC6	B	229	234	Right-handed alpha
Helix 25	AC7	B	254	265	Right-handed alpha
Helix 26	AC8	B	290	303	Right-handed alpha
Helix 27	AC9	C	41	55	Right-handed alpha
Helix 28	AD1	C	67	74	Right-handed alpha
Helix 29	AD2	C	95	106	Right-handed alpha
Helix 30	AD3	C	106	115	Right-handed alpha
Helix 31	AD4	C	133	143	Right-handed alpha
Helix 32	AD5	C	159	178	Right-handed alpha
Helix 33	AD6	C	186	191	Right-handed alpha
Helix 34	AD7	C	197	217	Right-handed alpha
Helix 35	AD8	C	229	237	Right-handed alpha
Helix 36	AD9	C	254	265	Right-handed alpha
Helix 37	AE1	C	290	305	Right-handed alpha
Helix 38	AE2	D	41	55	Right-handed alpha
Helix 39	AE3	D	67	72	Right-handed alpha
Helix 40	AE4	D	95	106	Right-handed alpha
Helix 41	AE5	D	106	112	Right-handed alpha
Helix 42	AE6	D	132	144	Right-handed alpha
Helix 43	AE7	D	159	178	Right-handed alpha
Helix 44	AE8	D	185	191	Right-handed alpha
Helix 45	AE9	D	197	221	Right-handed alpha
Helix 46	AF1	D	229	237	Right-handed alpha
Helix 47	AF2	D	254	265	Right-handed alpha
Helix 48	AF3	D	272	276	Right-handed 310
Helix 49	AF4	D	290	304	Right-handed alpha

There are 10 sheets in PDB entry 9V7V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	59	65	parallel
Strand 3	A	35	40	parallel
Strand 4	A	118	124	parallel
Strand 5	A	147	154	parallel
Strand 6	A	180	185	parallel
Strand 7	A	241	242	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	250	first strand
Strand 2	A	325	331	anti-parallel
Strand 3	A	279	281	anti-parallel
Strand 4	A	311	312	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	59	64	parallel
Strand 3	B	35	40	parallel
Strand 4	B	118	123	parallel
Strand 5	B	147	152	parallel
Strand 6	B	181	183	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	329	330	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	325	326	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	285	first strand
Strand 2	B	314	317	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	80	first strand
Strand 2	C	60	64	parallel
Strand 3	C	35	40	parallel
Strand 4	C	118	124	parallel
Strand 5	C	147	153	parallel
Strand 6	C	181	184	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	315	first strand
Strand 2	C	282	283	parallel
Strand 3	C	327	328	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	81	first strand
Strand 2	D	59	65	parallel
Strand 3	D	35	40	parallel
Strand 4	D	118	123	parallel
Strand 5	D	147	152	parallel
Strand 6	D	180	183	parallel
Strand 7	D	241	242	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	250	first strand
Strand 2	D	325	331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V7V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V7V