Analysis of interatomic Contacts of Structural Units in PDB entry:
9V7W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9V7W entry

There are 2 chains in PDB entry 9V7W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 52GLN 355
C
 PRO 7ALA 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9V7W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 72Right-handed alpha
Helix 2
AA2
A
85 92Right-handed 310
Helix 3
AA3
A
102 111Right-handed 310
Helix 4
AA4
A
116 119Right-handed 310
Helix 5
AA5
A
120 127Right-handed alpha
Helix 6
AA6
A
128 139Right-handed alpha
Helix 7
AA7
A
146 158Right-handed alpha
Helix 8
AA8
A
171 176Right-handed alpha
Helix 9
AA9
A
179 181Right-handed 310
Helix 10
AB1
A
206 216Right-handed alpha
Helix 11
AB2
A
240 251Right-handed alpha
Helix 12
AB3
A
268 270Right-handed 310
Helix 13
AB4
A
271 276Right-handed alpha
Helix 14
AB5
A
296 300Right-handed 310
Helix 15
AB6
A
323 335Right-handed alpha
Helix 16
AB7
A
337 354Right-handed alpha
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There are 3 sheets in PDB entry 9V7W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
161 166parallel
Strand 3
A
79 83parallel
Strand 4
A
256 260parallel
Strand 5
A
282 286parallel
Strand 6
A
317 321parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
188 195anti-parallel
Strand 3
A
228 232anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
C
10 11anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il