Analysis of interatomic Contacts of Structural Units in PDB entry:
9V7Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V7Y entry

There are 4 chains in PDB entry 9V7Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 12	ILE 400
B	LEU 12	ILE 400
C	LEU 12	ILE 400
D	LEU 12	THR 201

There are 95 helices in PDB entry 9V7Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	36	Right-handed alpha
Helix 2	AA2	A	38	45	Right-handed alpha
Helix 3	AA3	A	52	60	Right-handed alpha
Helix 4	AA4	A	94	109	Right-handed alpha
Helix 5	AA5	A	132	142	Right-handed alpha
Helix 6	AA6	A	143	154	Right-handed alpha
Helix 7	AA7	A	155	161	Right-handed alpha
Helix 8	AA8	A	195	215	Right-handed alpha
Helix 9	AA9	A	239	244	Right-handed 310
Helix 10	AB1	A	249	267	Right-handed alpha
Helix 11	AB2	A	267	289	Right-handed alpha
Helix 12	AB3	A	292	305	Right-handed alpha
Helix 13	AB4	A	344	355	Right-handed alpha
Helix 14	AB5	A	358	383	Right-handed alpha
Helix 15	AB6	A	386	391	Right-handed alpha
Helix 16	AB7	A	394	400	Right-handed alpha
Helix 17	AB8	B	18	22	Right-handed 310
Helix 18	AB9	B	23	36	Right-handed alpha
Helix 19	AC1	B	38	45	Right-handed alpha
Helix 20	AC2	B	52	58	Right-handed alpha
Helix 21	AC3	B	94	109	Right-handed alpha
Helix 22	AC4	B	132	142	Right-handed alpha
Helix 23	AC5	B	143	155	Right-handed alpha
Helix 24	AC6	B	155	161	Right-handed alpha
Helix 25	AC7	B	195	215	Right-handed alpha
Helix 26	AC8	B	239	243	Right-handed 310
Helix 27	AC9	B	249	267	Right-handed alpha
Helix 28	AD1	B	267	289	Right-handed alpha
Helix 29	AD2	B	292	305	Right-handed alpha
Helix 30	AD3	B	344	355	Right-handed alpha
Helix 31	AD4	B	358	382	Right-handed alpha
Helix 32	AD5	B	386	397	Right-handed alpha
Helix 33	AD6	C	23	36	Right-handed alpha
Helix 34	AD7	C	38	46	Right-handed alpha
Helix 35	AD8	C	52	60	Right-handed alpha
Helix 36	AD9	C	94	109	Right-handed alpha
Helix 37	AE1	C	132	142	Right-handed alpha
Helix 38	AE2	C	143	153	Right-handed alpha
Helix 39	AE3	C	155	161	Right-handed alpha
Helix 40	AE4	C	195	215	Right-handed alpha
Helix 41	AE5	C	239	244	Right-handed 310
Helix 42	AE6	C	249	267	Right-handed alpha
Helix 43	AE7	C	267	289	Right-handed alpha
Helix 44	AE8	C	292	304	Right-handed alpha
Helix 45	AE9	C	344	355	Right-handed alpha
Helix 46	AF1	C	358	383	Right-handed alpha
Helix 47	AF2	C	386	394	Right-handed alpha
Helix 48	AF3	C	394	400	Right-handed alpha
Helix 49	AF4	D	23	35	Right-handed alpha
Helix 50	AF5	D	38	46	Right-handed alpha
Helix 51	AF6	D	52	60	Right-handed alpha
Helix 52	AF7	D	94	108	Right-handed alpha
Helix 53	AF8	D	132	143	Right-handed alpha
Helix 54	AF9	D	143	153	Right-handed alpha
Helix 55	AG1	D	155	162	Right-handed alpha
Helix 56	AG2	D	195	215	Right-handed alpha
Helix 57	AG3	D	249	267	Right-handed alpha
Helix 58	AG4	D	267	289	Right-handed alpha
Helix 59	AG5	D	292	305	Right-handed alpha
Helix 60	AG6	D	344	355	Right-handed alpha
Helix 61	AG7	D	358	383	Right-handed alpha
Helix 62	AG8	D	386	394	Right-handed alpha
Helix 63	AG9	D	394	400	Right-handed alpha
Helix 64	AH1	E	23	36	Right-handed alpha
Helix 65	AH2	E	38	45	Right-handed alpha
Helix 66	AH3	E	52	60	Right-handed alpha
Helix 67	AH4	E	94	109	Right-handed alpha
Helix 68	AH5	E	132	143	Right-handed alpha
Helix 69	AH6	E	143	153	Right-handed alpha
Helix 70	AH7	E	155	161	Right-handed alpha
Helix 71	AH8	E	195	215	Right-handed alpha
Helix 72	AH9	E	239	244	Right-handed alpha
Helix 73	AI1	E	249	267	Right-handed alpha
Helix 74	AI2	E	267	289	Right-handed alpha
Helix 75	AI3	E	292	304	Right-handed alpha
Helix 76	AI4	E	344	355	Right-handed alpha
Helix 77	AI5	E	358	383	Right-handed alpha
Helix 78	AI6	E	386	391	Right-handed alpha
Helix 79	AI7	E	394	400	Right-handed alpha
Helix 80	AI8	F	23	36	Right-handed alpha
Helix 81	AI9	F	38	47	Right-handed alpha
Helix 82	AJ1	F	52	57	Right-handed alpha
Helix 83	AJ2	F	94	109	Right-handed alpha
Helix 84	AJ3	F	132	143	Right-handed alpha
Helix 85	AJ4	F	143	153	Right-handed alpha
Helix 86	AJ5	F	155	161	Right-handed alpha
Helix 87	AJ6	F	195	215	Right-handed alpha
Helix 88	AJ7	F	239	244	Right-handed alpha
Helix 89	AJ8	F	249	267	Right-handed alpha
Helix 90	AJ9	F	267	289	Right-handed alpha
Helix 91	AK1	F	292	305	Right-handed alpha
Helix 92	AK2	F	344	355	Right-handed alpha
Helix 93	AK3	F	358	383	Right-handed alpha
Helix 94	AK4	F	386	394	Right-handed alpha
Helix 95	AK5	F	394	400	Right-handed alpha

There are 18 sheets in PDB entry 9V7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	89	first strand
Strand 2	A	63	74	anti-parallel
Strand 3	B	63	78	anti-parallel
Strand 4	B	83	89	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	82	83	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	231	238	anti-parallel
Strand 3	A	324	331	anti-parallel
Strand 4	A	314	318	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	173	first strand
Strand 2	A	181	189	anti-parallel
Strand 3	A	120	128	anti-parallel
Strand 4	A	217	223	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	116	first strand
Strand 2	B	231	238	anti-parallel
Strand 3	B	324	331	anti-parallel
Strand 4	B	314	318	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	173	first strand
Strand 2	B	181	189	anti-parallel
Strand 3	B	120	128	anti-parallel
Strand 4	B	217	224	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	63	74	anti-parallel
Strand 3	E	63	78	anti-parallel
Strand 4	E	83	89	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	82	83	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	116	first strand
Strand 2	C	231	238	anti-parallel
Strand 3	C	324	331	anti-parallel
Strand 4	C	314	318	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	173	first strand
Strand 2	C	181	189	anti-parallel
Strand 3	C	120	128	anti-parallel
Strand 4	C	217	223	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	89	first strand
Strand 2	D	63	74	anti-parallel
Strand 3	F	63	79	anti-parallel
Strand 4	F	82	89	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	79	first strand
Strand 2	D	82	83	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	116	first strand
Strand 2	D	231	238	anti-parallel
Strand 3	D	324	331	anti-parallel
Strand 4	D	314	318	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	173	first strand
Strand 2	D	181	189	anti-parallel
Strand 3	D	120	128	anti-parallel
Strand 4	D	217	223	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	116	first strand
Strand 2	E	231	238	anti-parallel
Strand 3	E	324	331	anti-parallel
Strand 4	E	314	318	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	173	first strand
Strand 2	E	181	189	anti-parallel
Strand 3	E	120	128	anti-parallel
Strand 4	E	217	223	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	116	first strand
Strand 2	F	231	238	anti-parallel
Strand 3	F	324	331	anti-parallel
Strand 4	F	314	318	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	164	173	first strand
Strand 2	F	181	189	anti-parallel
Strand 3	F	120	128	anti-parallel
Strand 4	F	217	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V7Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V7Y