Analysis of interatomic Contacts of Structural Units in PDB entry:
9V80

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V80 entry

There are 3 chains in PDB entry 9V80 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2225	VAL 3255
B	MET 1	ASP 433
C	ALA 6	GLN 420

There are 26 helices in PDB entry 9V80. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2233	2245	Right-handed alpha
Helix 2	AA2	A	2366	2391	Right-handed alpha
Helix 3	AA3	A	2503	2510	Right-handed alpha
Helix 4	AA4	A	2524	2533	Right-handed alpha
Helix 5	AA5	A	2554	2569	Right-handed alpha
Helix 6	AA6	A	2667	2688	Right-handed alpha
Helix 7	AA7	A	2690	2695	Right-handed alpha
Helix 8	AA8	A	2695	2700	Right-handed alpha
Helix 9	AA9	A	2728	2733	Right-handed alpha
Helix 10	AB1	A	2763	2767	Right-handed 310
Helix 11	AB2	A	2789	2822	Right-handed alpha
Helix 12	AB3	A	2833	2843	Right-handed alpha
Helix 13	AB4	A	2857	2861	Right-handed 310
Helix 14	AB5	A	2909	2927	Right-handed alpha
Helix 15	AB6	A	3026	3038	Right-handed alpha
Helix 16	AB7	A	3041	3055	Right-handed alpha
Helix 17	AB8	A	3070	3082	Right-handed alpha
Helix 18	AB9	A	3249	3254	Right-handed alpha
Helix 19	AC1	B	393	401	Right-handed alpha
Helix 20	AC2	B	402	410	Right-handed alpha
Helix 21	AC3	B	417	431	Right-handed alpha
Helix 22	AC4	C	126	131	Right-handed alpha
Helix 23	AC5	C	191	195	Right-handed 310
Helix 24	AC6	C	289	294	Right-handed alpha
Helix 25	AC7	C	342	346	Right-handed 310
Helix 26	AC8	C	396	419	Right-handed alpha

There are 18 sheets in PDB entry 9V80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2578	2579	first strand
Strand 2	A	2588	2589	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2607	2612	first strand
Strand 2	A	2650	2655	anti-parallel
Strand 3	A	2658	2661	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2845	2853	first strand
Strand 2	A	3002	3011	anti-parallel
Strand 3	A	2990	2999	anti-parallel
Strand 4	A	2981	2986	anti-parallel
Strand 5	A	2930	2931	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3093	3095	first strand
Strand 2	A	3190	3194	anti-parallel
Strand 3	A	3165	3170	anti-parallel
Strand 4	A	3140	3145	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	341	345	parallel
Strand 3	B	331	335	anti-parallel
Strand 4	B	322	325	anti-parallel
Strand 5	B	311	313	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	377	381	anti-parallel
Strand 3	B	365	373	anti-parallel
Strand 4	B	350	359	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	45	48	anti-parallel
Strand 4	B	57	59	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	71	first strand
Strand 2	B	80	85	anti-parallel
Strand 3	B	90	93	anti-parallel
Strand 4	B	119	120	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	142	146	anti-parallel
Strand 3	B	151	158	anti-parallel
Strand 4	B	170	178	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	199	202	anti-parallel
Strand 3	B	206	209	anti-parallel
Strand 4	B	241	244	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	260	first strand
Strand 2	B	275	280	anti-parallel
Strand 3	B	284	289	anti-parallel
Strand 4	B	296	302	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	21	first strand
Strand 2	C	389	395	anti-parallel
Strand 3	C	384	386	anti-parallel
Strand 4	C	366	369	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	32	first strand
Strand 2	C	41	44	anti-parallel
Strand 3	C	50	58	anti-parallel
Strand 4	C	61	69	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	87	first strand
Strand 2	C	95	103	anti-parallel
Strand 3	C	110	116	anti-parallel
Strand 4	C	136	138	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	153	first strand
Strand 2	C	156	164	anti-parallel
Strand 3	C	170	176	anti-parallel
Strand 4	C	181	185	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	208	first strand
Strand 2	C	214	221	anti-parallel
Strand 3	C	225	232	anti-parallel
Strand 4	C	238	245	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	256	first strand
Strand 2	C	274	279	anti-parallel
Strand 3	C	285	288	anti-parallel
Strand 4	C	297	300	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	316	first strand
Strand 2	C	325	330	anti-parallel
Strand 3	C	335	341	anti-parallel
Strand 4	C	353	358	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V80

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V80