Analysis of interatomic Contacts of Structural Units in PDB entry:
9V83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9V83 entry

There are 4 chains in PDB entry 9V83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ASN 341
B
 THR 3GLN 339
C
 THR 3ASN 341
D
 MET 1ASN 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9V83. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 38Right-handed alpha
Helix 2
AA2
A
70 73Right-handed 310
Helix 3
AA3
A
85 94Right-handed alpha
Helix 4
AA4
A
133 137Right-handed 310
Helix 5
AA5
A
138 164Right-handed alpha
Helix 6
AA6
A
180 187Right-handed alpha
Helix 7
AA7
A
191 204Right-handed alpha
Helix 8
AA8
A
268 279Right-handed alpha
Helix 9
AA9
A
281 286Right-handed 310
Helix 10
AB1
A
287 295Right-handed alpha
Helix 11
AB2
A
308 316Right-handed alpha
Helix 12
AB3
A
320 324Right-handed 310
Helix 13
AB4
A
330 340Right-handed alpha
Helix 14
AB5
B
14 38Right-handed alpha
Helix 15
AB6
B
70 73Right-handed 310
Helix 16
AB7
B
85 94Right-handed alpha
Helix 17
AB8
B
133 137Right-handed 310
Helix 18
AB9
B
138 164Right-handed alpha
Helix 19
AC1
B
180 187Right-handed alpha
Helix 20
AC2
B
191 204Right-handed alpha
Helix 21
AC3
B
268 279Right-handed alpha
Helix 22
AC4
B
281 286Right-handed 310
Helix 23
AC5
B
287 295Right-handed alpha
Helix 24
AC6
B
308 316Right-handed alpha
Helix 25
AC7
B
320 324Right-handed 310
Helix 26
AC8
B
330 339Right-handed alpha
Helix 27
AC9
C
14 38Right-handed alpha
Helix 28
AD1
C
70 73Right-handed 310
Helix 29
AD2
C
85 94Right-handed alpha
Helix 30
AD3
C
133 137Right-handed 310
Helix 31
AD4
C
138 164Right-handed alpha
Helix 32
AD5
C
180 187Right-handed alpha
Helix 33
AD6
C
191 204Right-handed alpha
Helix 34
AD7
C
268 279Right-handed alpha
Helix 35
AD8
C
281 286Right-handed 310
Helix 36
AD9
C
287 295Right-handed alpha
Helix 37
AE1
C
308 316Right-handed alpha
Helix 38
AE2
C
320 324Right-handed 310
Helix 39
AE3
C
330 340Right-handed alpha
Helix 40
AE4
D
14 38Right-handed alpha
Helix 41
AE5
D
70 73Right-handed 310
Helix 42
AE6
D
85 94Right-handed alpha
Helix 43
AE7
D
133 137Right-handed 310
Helix 44
AE8
D
138 164Right-handed alpha
Helix 45
AE9
D
180 187Right-handed alpha
Helix 46
AF1
D
191 204Right-handed alpha
Helix 47
AF2
D
268 279Right-handed alpha
Helix 48
AF3
D
281 286Right-handed 310
Helix 49
AF4
D
287 295Right-handed alpha
Helix 50
AF5
D
308 316Right-handed alpha
Helix 51
AF6
D
320 324Right-handed 310
Helix 52
AF7
D
330 340Right-handed alpha
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There are 9 sheets in PDB entry 9V83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
101 109parallel
Strand 3
A
122 131anti-parallel
Strand 4
A
301 307anti-parallel
Strand 5
A
256 265anti-parallel
Strand 6
A
244 251anti-parallel
Strand 7
A
205 209anti-parallel
Strand 8
A
176 179parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
76 79anti-parallel
Strand 3
A
66 68anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
101 109parallel
Strand 3
B
122 132anti-parallel
Strand 4
B
300 307anti-parallel
Strand 5
B
256 265anti-parallel
Strand 6
B
244 251anti-parallel
Strand 7
B
205 209anti-parallel
Strand 8
B
176 179parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
76 79anti-parallel
Strand 3
B
66 68anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 41first strand
Strand 2
C
101 109parallel
Strand 3
C
122 131anti-parallel
Strand 4
C
301 307anti-parallel
Strand 5
C
256 265anti-parallel
Strand 6
C
244 251anti-parallel
Strand 7
C
205 209anti-parallel
Strand 8
C
176 179parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 49first strand
Strand 2
C
76 79anti-parallel
Strand 3
C
66 68anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
235 237first strand
Strand 2
C
240 241anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 41first strand
Strand 2
D
101 109parallel
Strand 3
D
122 132anti-parallel
Strand 4
D
300 307anti-parallel
Strand 5
D
256 265anti-parallel
Strand 6
D
244 251anti-parallel
Strand 7
D
205 209anti-parallel
Strand 8
D
176 179parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 49first strand
Strand 2
D
76 79anti-parallel
Strand 3
D
66 68anti-parallel
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