Analysis of interatomic Contacts of Structural Units in PDB entry:
9V84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9V84 entry

There are 8 chains in PDB entry 9V84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 348	MET 507
A	SER 346	MET 507
C	SER 346	MET 507
D	SER 346	MET 507
E	SER 346	MET 507
F	SER 346	MET 507
G	SER 346	MET 507
H	THR 345	MET 507

There are 64 helices in PDB entry 9V84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	348	353	Right-handed alpha
Helix 2	AA2	B	364	375	Right-handed alpha
Helix 3	AA3	B	380	394	Right-handed alpha
Helix 4	AA4	B	435	439	Right-handed 310
Helix 5	AA5	B	456	459	Right-handed 310
Helix 6	AA6	B	463	467	Right-handed 310
Helix 7	AA7	B	481	492	Right-handed alpha
Helix 8	AA8	B	499	505	Right-handed alpha
Helix 9	AA9	A	347	352	Right-handed alpha
Helix 10	AB1	A	364	375	Right-handed alpha
Helix 11	AB2	A	380	394	Right-handed alpha
Helix 12	AB3	A	435	439	Right-handed 310
Helix 13	AB4	A	456	459	Right-handed 310
Helix 14	AB5	A	463	467	Right-handed 310
Helix 15	AB6	A	481	491	Right-handed alpha
Helix 16	AB7	A	499	507	Right-handed alpha
Helix 17	AB8	C	347	353	Right-handed alpha
Helix 18	AB9	C	364	375	Right-handed alpha
Helix 19	AC1	C	380	394	Right-handed alpha
Helix 20	AC2	C	435	439	Right-handed 310
Helix 21	AC3	C	456	459	Right-handed 310
Helix 22	AC4	C	463	467	Right-handed 310
Helix 23	AC5	C	481	492	Right-handed alpha
Helix 24	AC6	C	499	505	Right-handed alpha
Helix 25	AC7	D	347	353	Right-handed alpha
Helix 26	AC8	D	364	375	Right-handed alpha
Helix 27	AC9	D	380	394	Right-handed alpha
Helix 28	AD1	D	435	439	Right-handed 310
Helix 29	AD2	D	456	459	Right-handed 310
Helix 30	AD3	D	463	467	Right-handed 310
Helix 31	AD4	D	481	492	Right-handed alpha
Helix 32	AD5	D	499	505	Right-handed alpha
Helix 33	AD6	E	347	353	Right-handed alpha
Helix 34	AD7	E	364	375	Right-handed alpha
Helix 35	AD8	E	380	394	Right-handed alpha
Helix 36	AD9	E	435	439	Right-handed 310
Helix 37	AE1	E	456	458	Right-handed 310
Helix 38	AE2	E	463	467	Right-handed 310
Helix 39	AE3	E	481	492	Right-handed alpha
Helix 40	AE4	E	499	505	Right-handed alpha
Helix 41	AE5	F	347	353	Right-handed alpha
Helix 42	AE6	F	364	375	Right-handed alpha
Helix 43	AE7	F	380	394	Right-handed alpha
Helix 44	AE8	F	435	439	Right-handed 310
Helix 45	AE9	F	456	459	Right-handed 310
Helix 46	AF1	F	463	467	Right-handed 310
Helix 47	AF2	F	481	492	Right-handed alpha
Helix 48	AF3	F	499	506	Right-handed alpha
Helix 49	AF4	G	347	352	Right-handed alpha
Helix 50	AF5	G	364	375	Right-handed alpha
Helix 51	AF6	G	380	392	Right-handed alpha
Helix 52	AF7	G	435	439	Right-handed 310
Helix 53	AF8	G	456	459	Right-handed 310
Helix 54	AF9	G	463	467	Right-handed 310
Helix 55	AG1	G	481	492	Right-handed alpha
Helix 56	AG2	G	503	507	Right-handed 310
Helix 57	AG3	H	346	353	Right-handed alpha
Helix 58	AG4	H	364	375	Right-handed alpha
Helix 59	AG5	H	380	394	Right-handed alpha
Helix 60	AG6	H	435	439	Right-handed 310
Helix 61	AG7	H	456	459	Right-handed 310
Helix 62	AG8	H	463	467	Right-handed 310
Helix 63	AG9	H	481	492	Right-handed alpha
Helix 64	AH1	H	499	506	Right-handed alpha

There are 16 sheets in PDB entry 9V84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	378	first strand
Strand 2	B	442	449	anti-parallel
Strand 3	B	411	415	anti-parallel
Strand 4	B	397	403	anti-parallel
Strand 5	B	356	362	parallel
Strand 6	B	479	480	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	409	first strand
Strand 2	B	453	454	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	378	first strand
Strand 2	A	442	449	anti-parallel
Strand 3	A	411	415	anti-parallel
Strand 4	A	396	403	anti-parallel
Strand 5	A	355	362	parallel
Strand 6	A	479	480	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	409	first strand
Strand 2	A	453	454	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	378	first strand
Strand 2	C	442	449	anti-parallel
Strand 3	C	411	415	anti-parallel
Strand 4	C	396	403	anti-parallel
Strand 5	C	355	362	parallel
Strand 6	C	479	480	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	408	409	first strand
Strand 2	C	453	454	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	378	first strand
Strand 2	D	442	449	anti-parallel
Strand 3	D	411	415	anti-parallel
Strand 4	D	397	403	anti-parallel
Strand 5	D	356	362	parallel
Strand 6	D	479	480	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	408	409	first strand
Strand 2	D	453	454	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	378	first strand
Strand 2	E	442	449	anti-parallel
Strand 3	E	411	415	anti-parallel
Strand 4	E	397	401	anti-parallel
Strand 5	E	356	360	parallel
Strand 6	E	479	480	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	408	409	first strand
Strand 2	E	453	454	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	376	378	first strand
Strand 2	F	442	449	anti-parallel
Strand 3	F	411	415	anti-parallel
Strand 4	F	397	401	anti-parallel
Strand 5	F	356	360	parallel
Strand 6	F	479	480	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	408	409	first strand
Strand 2	F	453	454	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	376	378	first strand
Strand 2	G	442	449	anti-parallel
Strand 3	G	411	415	anti-parallel
Strand 4	G	397	403	anti-parallel
Strand 5	G	356	362	parallel
Strand 6	G	479	480	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	408	409	first strand
Strand 2	G	453	454	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	376	378	first strand
Strand 2	H	442	449	anti-parallel
Strand 3	H	411	415	anti-parallel
Strand 4	H	397	401	anti-parallel
Strand 5	H	356	360	parallel
Strand 6	H	479	480	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	408	409	first strand
Strand 2	H	453	454	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9V84

Analysis of interatomic Contacts of Structural Units in PDB entry:
9V84