Analysis of interatomic Contacts of Structural Units in PDB entry:
9V85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9V85 entry

There are 3 chains in PDB entry 9V85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 64
A
 VAL 66SER 446
C
 SER 43ALA 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9V85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 9Right-handed 310
Helix 2
AA2
A
56 61Right-handed 310
Helix 3
AA3
A
66 70Right-handed 310
Helix 4
AA4
A
73 79Right-handed 310
Helix 5
AA5
A
80 85Right-handed alpha
Helix 6
AA6
A
244 255Right-handed alpha
Helix 7
AA7
A
323 325Right-handed 310
Helix 8
AA8
A
352 354Right-handed 310
Helix 9
AA9
C
58 69Right-handed alpha
Helix 10
AB1
C
137 139Right-handed 310
Helix 11
AB2
C
166 168Right-handed 310
Helix 12
AB3
C
259 264Right-handed alpha
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There are 9 sheets in PDB entry 9V85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 22first strand
Strand 2
A
25 36anti-parallel
Strand 3
A
41 48anti-parallel
Strand 4
A
215 225anti-parallel
Strand 5
A
197 206anti-parallel
Strand 6
A
146 153anti-parallel
Strand 7
A
158 168anti-parallel
Strand 8
A
174 185anti-parallel
Strand 9
A
90 98anti-parallel
Strand 10
A
103 113anti-parallel
Strand 11
A
116 126anti-parallel
Strand 12
A
11 22parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 236first strand
Strand 2
A
259 263parallel
Strand 3
A
288 292parallel
Strand 4
A
327 331parallel
Strand 5
A
433 436parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 242first strand
Strand 2
A
267 269parallel
Strand 3
A
296 298parallel
Strand 4
A
334 336parallel
Strand 5
A
439 441parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 279first strand
Strand 2
A
319 321parallel
Strand 3
A
427 429parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
345 346anti-parallel
Strand 3
A
416 417anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 50first strand
Strand 2
C
73 77parallel
Strand 3
C
102 106parallel
Strand 4
C
141 145parallel
Strand 5
C
247 250parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 56first strand
Strand 2
C
81 83parallel
Strand 3
C
110 112parallel
Strand 4
C
148 150parallel
Strand 5
C
253 255parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 93first strand
Strand 2
C
133 135parallel
Strand 3
C
241 243parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 171first strand
Strand 2
C
159 160anti-parallel
Strand 3
C
230 231anti-parallel
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