Analysis of interatomic Contacts of Structural Units in PDB entry:
9VA5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VA5 entry

There is 1 chain in PDB entry 9VA5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -2GLN 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9VA5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 2Right-handed 310
Helix 2
AA2
A
26 36Right-handed alpha
Helix 3
AA3
A
87 103Right-handed alpha
Helix 4
AA4
A
127 139Right-handed alpha
Helix 5
AA5
A
150 153Right-handed 310
Helix 6
AA6
A
191 204Right-handed alpha
Helix 7
AA7
A
206 224Right-handed alpha
Helix 8
AA8
A
261 270Right-handed alpha
Helix 9
AA9
A
279 291Right-handed alpha
Helix 10
AB1
A
341 360Right-handed alpha
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There are 4 sheets in PDB entry 9VA5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
13 17anti-parallel
Strand 3
A
6 10anti-parallel
Strand 4
A
143 148anti-parallel
Strand 5
A
160 165anti-parallel
Strand 6
A
318 321anti-parallel
Strand 7
A
327 336anti-parallel
Strand 8
A
111 122anti-parallel
Strand 9
A
79 85anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
13 17anti-parallel
Strand 3
A
6 10anti-parallel
Strand 4
A
143 148anti-parallel
Strand 5
A
160 165anti-parallel
Strand 6
A
318 321anti-parallel
Strand 7
A
327 336anti-parallel
Strand 8
A
111 122anti-parallel
Strand 9
A
277 278anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
55 59anti-parallel
Strand 3
A
41 46anti-parallel
Strand 4
A
300 305anti-parallel
Strand 5
A
310 314anti-parallel
Strand 6
A
168 173anti-parallel
Strand 7
A
176 180anti-parallel
Strand 8
A
251 255anti-parallel
Strand 9
A
227 232anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 187first strand
Strand 2
A
244 248anti-parallel
Strand 3
A
237 240anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il